Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14080 277 / 3e-88 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G64320 81 / 2e-16 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G20740 80 / 3e-16 EMB3131 EMBRYO DEFECTIVE 3131, Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G71060 80 / 3e-16 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G22470 77 / 4e-15 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G18390 76 / 7e-15 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12775 74 / 3e-14 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74750 71 / 5e-13 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G01400 67 / 3e-12 unknown protein AT1G18900 67 / 6e-12 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041542 [exp] 514 / 2e-180 AT5G14080 671 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036090 [exp] 87 / 2e-18 AT1G52620 755 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026791 [exp] 82 / 7e-17 AT1G52620 741 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001633 [exp] 79 / 6e-16 AT1G71060 602 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010662 [exp] 78 / 1e-15 AT5G43820 624 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033110 [exp] 76 / 8e-15 AT1G18900 1091 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3) Lus10002675 [exp] 72 / 1e-13 AT4G01400 570 / 0.0 unknown protein Lus10039799 [exp] 69 / 7e-13 AT1G03560 473 / 5e-164 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10013972 [exp] 69 / 9e-13 AT5G46100 520 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G326800 [exp] 335 / 2e-110 AT5G14080 684 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G203100 [exp] 82 / 5e-17 AT4G20740 964 / 0.0 EMBRYO DEFECTIVE 3131, Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.010G114700 [exp] 77 / 4e-15 AT1G71060 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G105900 [exp] 76 / 5e-15 AT4G01400 576 / 0.0 unknown protein Potri.014G090400 [exp] 74 / 2e-14 AT5G28460 637 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G200800 [exp] 71 / 3e-13 AT5G06400 1132 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G066400 [exp] 71 / 3e-13 AT1G18900 1107 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3) Potri.010G084000 [exp] 69 / 9e-13 AT3G22670 489 / 3e-168 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G176100 [exp] 69 / 2e-12 AT3G49730 783 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G139200 [exp] 68 / 2e-12 AT1G52620 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10012551 pacid=23143836 polypeptide=Lus10012551 locus=Lus10012551.g ID=Lus10012551.BGIv1.0 annot-version=v1.0 ATGCACACTCTTCACAGGCTTGGCTGTCGGGAGGCACTGACTCCATTCCTGGTGGCTGGCGTAATCGACCCGCATCTGTTGAGTCACCACTCGCTTGCTC TCGGGTTTTTCAACTGGGCCACTCAGCAACCCGGATTCGCTCACAACTCCATCTCGTATCAATCCATCTTCAAGTCTCTCTCGTCTTCTTGGCAATTTAC TGCCGTCGACTCTTTGTTGAAGCAAGTTAAAGCCCAGAGCTTGCCTCTCGATTCGTCGACGTATAGCTTCGTCGTTAAGGCTTTGTTACAAGGGAAGAAG ACCCTTAACGCGTTTCGTGTATTTAACGGCGCTAAATCCGGGCTATCTTGTCTTGATCCTAAGGTGTGCAACTCGCTTTTGGCTGCTTTGAGTTCTGAAG GGTGTCTCGACAATGCATTCAAGGTGTATGAAGAAATGACAAGAAGAGAAGTTGCCTTCAGTACTATTGGGTTTGGAGTGTTTATATGGAAGCTTTGTGC AAAAAACAATTTGGATGTAGTGCTAATCGTGTTGGATAGGGTGAATAATGATGGAAAGTCTTCCATCAATGGATCAGTTATCGCTTTTCTTATTGTTCAC GGCCTTTGTAAGGTTTCCAGGAATGATGAAGCTTTGTGGGTATTGAACGAGTTGAGAATGAAGAAGTGCAAGCCTGATTTTATGGCATATAGAATAGTTG CGGAGGCATTTAGATCAACGGGGAGTGTGGTTGATGTGAACATAATTCTGAAGATGAAGAGAAAGTTGGGTGTAGCACCGAGAAGTCAATTCCTTTTGAG TTCTAAGGTGCTCCATGGCCTCACTAATGATATAGGACATTCAGGCTCTCATGTGCTCTTGATGAAATGTCTAGCTGACGCTAAAGAGTTCAGATTGGCA GTTGAACATGTACGACGGATTCGAGACACCTCATCTTTGATGTTTCATACAATTGTTTCTGAGGTTCCGGCCTCGTTATCTACTTCCATTGAGCAAGATT TGCTTCGGCAGTTAGTCCAGGCCATGGCGGAATAA
AA sequence Show only first row Show all	>Lus10012551 pacid=23143836 polypeptide=Lus10012551 locus=Lus10012551.g ID=Lus10012551.BGIv1.0 annot-version=v1.0 MHTLHRLGCREALTPFLVAGVIDPHLLSHHSLALGFFNWATQQPGFAHNSISYQSIFKSLSSSWQFTAVDSLLKQVKAQSLPLDSSTYSFVVKALLQGKK TLNAFRVFNGAKSGLSCLDPKVCNSLLAALSSEGCLDNAFKVYEEMTRREVAFSTIGFGVFIWKLCAKNNLDVVLIVLDRVNNDGKSSINGSVIAFLIVH GLCKVSRNDEALWVLNELRMKKCKPDFMAYRIVAEAFRSTGSVVDVNIILKMKRKLGVAPRSQFLLSSKVLHGLTNDIGHSGSHVLLMKCLADAKEFRLA VEHVRRIRDTSSLMFHTIVSEVPASLSTSIEQDLLRQLVQAMAE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14080			Tetratricopeptide repeat (TPR)...		Lus10012551 [exp]	0	1
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10017298 [exp]	48.1	0.5834
AT1G74350			Intron maturase, type II famil...		Lus10017037 [exp]	50.0	0.6181
AT5G40410			Tetratricopeptide repeat (TPR)...		Lus10005638 [exp]	52.2	0.5978
AT1G04640		LIP2	lipoyltransferase 2 (.1.2)		Lus10031801 [exp]	70.3	0.5750
					Lus10035468 [exp]	126.2	0.5510
AT1G62930		RPF3	RNA processing factor 3, Tetra...		Lus10021074 [exp]	183.4	0.5496

Compare expression of checked genes

Lus10012551 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.