Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41040 620 / 0 HXXXD-type acyl-transferase family protein (.1.2) AT5G63560 527 / 0 HXXXD-type acyl-transferase family protein (.1) AT3G48720 499 / 3e-176 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1) AT5G48930 278 / 2e-89 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) AT1G27620 240 / 2e-74 HXXXD-type acyl-transferase family protein (.1) AT1G03390 228 / 8e-70 HXXXD-type acyl-transferase family protein (.1) AT1G65450 227 / 1e-69 HXXXD-type acyl-transferase family protein (.1.2.3) AT3G03480 218 / 4e-66 CHAT acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase (.1) AT2G19070 211 / 2e-63 SHT spermidine hydroxycinnamoyl transferase (.1) AT5G17540 211 / 3e-63 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032554 [exp] 592 / 0 AT5G41040 640 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10043189 [exp] 585 / 0 AT5G41040 635 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10035189 [exp] 426 / 5e-147 AT5G41040 440 / 2e-152 HXXXD-type acyl-transferase family protein (.1.2) Lus10035190 [exp] 422 / 1e-145 AT5G41040 419 / 5e-144 HXXXD-type acyl-transferase family protein (.1.2) Lus10032019 [exp] 415 / 9e-143 AT5G41040 446 / 1e-154 HXXXD-type acyl-transferase family protein (.1.2) Lus10032020 [exp] 413 / 3e-140 AT5G41040 443 / 2e-151 HXXXD-type acyl-transferase family protein (.1.2) Lus10039329 [exp] 387 / 1e-131 AT5G41040 398 / 5e-136 HXXXD-type acyl-transferase family protein (.1.2) Lus10025523 [exp] 380 / 2e-129 AT5G41040 406 / 3e-139 HXXXD-type acyl-transferase family protein (.1.2) Lus10005439 [exp] 339 / 4e-113 AT5G41040 364 / 2e-122 HXXXD-type acyl-transferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G326300 [exp] 658 / 0 AT5G41040 677 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.015G100800 [exp] 608 / 0 AT5G41040 644 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.017G068500 [exp] 558 / 0 AT5G41040 583 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.014G166600 [exp] 367 / 3e-124 AT5G41040 394 / 2e-134 HXXXD-type acyl-transferase family protein (.1.2) Potri.003G183900 [exp] 291 / 1e-94 AT5G48930 758 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.001G042900 [exp] 284 / 9e-92 AT5G48930 749 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.018G105500 [exp] 275 / 5e-88 AT5G48930 556 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.002G032200 [exp] 251 / 1e-78 AT1G27620 614 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.005G230900 [exp] 247 / 4e-77 AT1G27620 607 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.006G157100 [exp] 246 / 9e-77 AT1G03390 627 / 0.0 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10012552 pacid=23143877 polypeptide=Lus10012552 locus=Lus10012552.g ID=Lus10012552.BGIv1.0 annot-version=v1.0 ATGGAGAACTCAAACGGCAACGCTTTCGAGCTGGTCGTGAAGCAAAAGGAACCCATCGTTGTGACTCCAGCAGAGGAAACAGAGAAAGGGCTTTACTTCC TGTCAAATCTCGACCAGAACATTGCGGTCATTGTCCGAACCATTTACTGCTTCAAATCGAAAGAGAAGGGAAACGAGGATGCCTCGGAGGTGATCAGGAA GGCCCTGGGGGAAGTACTTGTTCATTACTACCCGCTTGCCGGCAGGCTGACCATCAGCTCGGATGGTAAGCTCATCGTTGACTGCAATGGAGAAGGTGCC ATTTTCGTCGAAGCTGAGACAGGTTGTAACCTGGAAGACATTGGTGACATCACTGAGCCTGATCCTGACACACTTGGCAAGCTCGTTTACCACATTCCAG GCGCTAACAACATCCTGGAAATGCCTCCTCTTGTTGCTCAGGTGACTAAGTTCAGATGCGGAGGATTTGTGCTTGGGTTGAGCGTGAATCATTGTATGTT CGACGGAATCGGAGCGATGGAGTTCGTGAATTCATGGGGAGAGACAGCCAGAGGCCTTCCACTCTCAGTCCCGCCGTTCATGGACAGAAGCATACTCAGA GCTCGAAGCCCTCCCAAAATCGAACACCTCCATCACGAATTCTTGGAGATAGAACACAAATCATCCACCACCAATGGGCATGAACAAGAAGAAGAACAAA CCACCGTCTACAAGTCCTTCCGTTTCACCCCCGAAATGCTGGAAACCCTCAAATCAACAGCCACAGAAGGCGGCAACAACTCACAGAAGAAGCGCACAGC TTTCGAAGCTCTGTCGGGATTCGTGTGGAGAGCCAGAACCGAATCGCTCAACTTGCCTTCCGATCAGAAGACCAAGCTACTGTTCGCCGTCGACGGCAGG GCCAAATTCAAACCTCCCTTGCCTCGAGGCTACTTCGGGAACGGAGTCGTGCTGACGAATTCGATATCGGAAGCTGGTGAATTGACGGGGAAGCCGCTTT CGTTTGCTGCTGGATTAGTTCACGATACTATAACCATGGTGACCGACGGCTACATGAGGTCTGCGATTGATTATTTCGAGGCGACGAGGGAGAGGCCTTC GTTGGCGTCGACGCTGCTGATTACTACTTGGTCGAGGCTAGGGTTCCACACCACGGATTTCGGGTGGGGGGAGCCGGTTGTTTCTGGGCCGGTGGCGTTG CCGGAGAAGGAAGTGATTCTGTTTCTGTCGCACGGGAAGGAGAGGAAGAGCATCAATGTGGTTGTCGGTCTTCCGAAATCTGCCATGGAAGTGTTTGAGA AGAAGATGGAAATCTAG
AA sequence Show only first row Show all	>Lus10012552 pacid=23143877 polypeptide=Lus10012552 locus=Lus10012552.g ID=Lus10012552.BGIv1.0 annot-version=v1.0 MENSNGNAFELVVKQKEPIVVTPAEETEKGLYFLSNLDQNIAVIVRTIYCFKSKEKGNEDASEVIRKALGEVLVHYYPLAGRLTISSDGKLIVDCNGEGA IFVEAETGCNLEDIGDITEPDPDTLGKLVYHIPGANNILEMPPLVAQVTKFRCGGFVLGLSVNHCMFDGIGAMEFVNSWGETARGLPLSVPPFMDRSILR ARSPPKIEHLHHEFLEIEHKSSTTNGHEQEEEQTTVYKSFRFTPEMLETLKSTATEGGNNSQKKRTAFEALSGFVWRARTESLNLPSDQKTKLLFAVDGR AKFKPPLPRGYFGNGVVLTNSISEAGELTGKPLSFAAGLVHDTITMVTDGYMRSAIDYFEATRERPSLASTLLITTWSRLGFHTTDFGWGEPVVSGPVAL PEKEVILFLSHGKERKSINVVVGLPKSAMEVFEKKMEI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10012552 [exp]	0	1
AT1G15360	AP2_ERF	WIN1, SHN1	WAX INDUCER 1, SHINE 1, Integr...		Lus10030097 [exp]	5.0	0.9360
AT3G03430			Calcium-binding EF-hand family...		Lus10033587 [exp]	5.9	0.9209
AT4G02300			Plant invertase/pectin methyle...		Lus10001466 [exp]	7.5	0.9320
AT4G02320			Plant invertase/pectin methyle...		Lus10001467 [exp]	9.2	0.9302
AT5G20860			Plant invertase/pectin methyle...		Lus10017665 [exp]	10.4	0.9289
AT5G20860			Plant invertase/pectin methyle...		Lus10033621 [exp]	12.6	0.9097
AT5G01700			Protein phosphatase 2C family ...		Lus10001268 [exp]	13.1	0.7398
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10031548 [exp]	14.0	0.9103
AT1G63710		CYP86A7	"cytochrome P450, family 86, s...		Lus10032278 [exp]	14.3	0.9116
AT5G45340		CYP707A3	"cytochrome P450, family 707, ...		Lus10018898 [exp]	14.7	0.8544

Compare expression of checked genes

Lus10012552 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.