Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13990 585 / 0 ATEXO70C2 exocyst subunit exo70 family protein C2 (.1) AT5G13150 514 / 6e-171 ATEXO70C1 exocyst subunit exo70 family protein C1 (.1) AT5G58430 329 / 2e-100 ATEXO70B1 exocyst subunit exo70 family protein B1 (.1) AT1G72470 316 / 1e-95 ATEXO70D1 exocyst subunit exo70 family protein D1 (.1) AT3G14090 313 / 9e-95 ATEXO70D3 exocyst subunit exo70 family protein D3 (.1) AT5G50380 308 / 3e-92 ATEXO70F1 exocyst subunit exo70 family protein F1 (.1) AT1G54090 292 / 6e-87 ATEXO70D2 exocyst subunit exo70 family protein D2 (.1) AT1G07000 272 / 8e-80 ATEXO70B2 exocyst subunit exo70 family protein B2 (.1) AT5G03540 265 / 6e-78 ATEXO70A1 exocyst subunit exo70 family protein A1 (.1.2.3) AT5G52340 258 / 2e-74 ATEXO70A2 exocyst subunit exo70 family protein A2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041536 [exp] 1261 / 0 AT5G13990 608 / 0.0 exocyst subunit exo70 family protein C2 (.1) Lus10015757 [exp] 504 / 1e-166 AT5G13150 585 / 0.0 exocyst subunit exo70 family protein C1 (.1) Lus10011334 [exp] 467 / 6e-153 AT5G13150 541 / 0.0 exocyst subunit exo70 family protein C1 (.1) Lus10003142 [exp] 456 / 2e-148 AT5G13150 548 / 0.0 exocyst subunit exo70 family protein C1 (.1) Lus10037048 [exp] 363 / 5e-111 AT5G13150 426 / 5e-139 exocyst subunit exo70 family protein C1 (.1) Lus10016764 [exp] 331 / 1e-100 AT5G50380 807 / 0.0 exocyst subunit exo70 family protein F1 (.1) Lus10022459 [exp] 327 / 3e-100 AT5G50380 749 / 0.0 exocyst subunit exo70 family protein F1 (.1) Lus10008126 [exp] 327 / 3e-99 AT1G72470 862 / 0.0 exocyst subunit exo70 family protein D1 (.1) Lus10013163 [exp] 314 / 3e-97 AT1G72470 740 / 0.0 exocyst subunit exo70 family protein D1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G325600 [exp] 704 / 0 AT5G13990 662 / 0.0 exocyst subunit exo70 family protein C2 (.1) Potri.017G068000 [exp] 696 / 0 AT5G13990 640 / 0.0 exocyst subunit exo70 family protein C2 (.1) Potri.001G060700 [exp] 549 / 0 AT5G13150 658 / 0.0 exocyst subunit exo70 family protein C1 (.1) Potri.012G097100 [exp] 334 / 6e-102 AT5G50380 754 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.001G166400 [exp] 330 / 9e-101 AT1G72470 822 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.015G094800 [exp] 328 / 8e-100 AT5G50380 785 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.013G152900 [exp] 318 / 3e-96 AT5G58430 781 / 0.0 exocyst subunit exo70 family protein B1 (.1) Potri.003G068700 [exp] 315 / 2e-95 AT1G72470 810 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.019G124000 [exp] 308 / 1e-92 AT5G58430 726 / 0.0 exocyst subunit exo70 family protein B1 (.1) Potri.017G093966 [exp] 284 / 1e-83 AT3G29400 597 / 0.0 exocyst subunit exo70 family protein E1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [flax] [poplar] Vps51 PF03081 [flax] [poplar] Exo70 Exo70 exocyst complex subunit
Representative CDS sequence Show only first row Show all	>Lus10012555 pacid=23143901 polypeptide=Lus10012555 locus=Lus10012555.g ID=Lus10012555.BGIv1.0 annot-version=v1.0 ATGGAATCAGGAGATAACAACGTAAATCATGATCAGGAAGATGATCAAGCACATTCTGACAATAACAAATCTGACGATACAAAATATGACCCTCCTCCTC CTCCTGATGATCCTTCCGATCCTCCAACTTCCGATTCGATCTCTAACCTACTGTCCAGTAACCTTATGGACTCCGAAACAGATCCTGACTCCAAACCGGC GGAACAAAACGAAGACATTTCCTCTCCTCCTCATCCTGAAGAAATCCACATAACGCTGGAAACGCTTTCCCCTAACATCGATCAATTTTTGTCTTCTCTA CCCGAAAAAATGATAGAATTCTATCAAGAAATATCCGCCCAACAAAACCAAGAAGTCATTGTTGATAAAGGAGATGGAGATAAAAATAAGAATGAAGATC TTACTGATCAGGGCGAGAAAGCTGTAGGTGACGAAATCAAAGATGGAGAAAAGAAGTCTGAAGATTCCGAACCTGAAAAGGAAAATGAGAATGAGCATGA GAAGGAGAATGAAAATGAGAAGAAAGAGGAGGATGTGGATAAGAAGTCAGAGAGCGAGAAGAAGATCTATTCAATTGAGATGCCAGAATTCATCAACAAG TTCGTGGATCTCGTCGAGGCGAAGATAACCGAACGCGACTCGGATGATCAAGATGATAGGAAAGGAGGTAAATGGTGTAAATCCCCTGATCACGACTCAG CATTTCTGGTGATGGTTAGTCGCCTCACCAGGTTGACAACTTCCTTCAGCGGCTACTTCAAATCAGATCCAGTTCACGCCCCACTTGCCAACCGAATCGG ATTTATCCATCACAAAGCGATGGTATACTTGGAGGATGAGTTCAGGTACCTCCTTGAAGAACAGTCGAAGCCGGTCGAACCTGATTCGCCTGCTCAAGGC GGAAATCCGGAAGGAGGTGAGGAATATCATAGCCCACTGCCAGAATCAGAATCTAAAAATGATCAAGAGGATCAATACGAATCTCCTTACCCTGGTTACG AGGAGGAAGTGGTGACCAATTTGAGGAAAATTGGGGAAGCTATGATCACCGCCGGATATGAATCCGAGTGCTGCCAGGTCTACATGATAATCCGACGACA CGCAATCGACGAATGCCTGGTCCAATCGGGATTCGAGAAGATTAGCATCGACGAGCTGCATAAGATGGCGTGGGAGAATTTGGAAAAGGAAATCCCGATC ATGACAGCAATCATGAAGGAATGCGCCACCATTCATTTCCCCAAAGAGCACAAACTAGTCCATTCTATTTTCCCCTCCGGCAACGAATCATCACCATCGT CGGCCTTGTCCTCTTCCGTTCTCTTCACAAACCTCGCGAGAGGAGTCCTGATCCAGTTCCTCAACTTCGCAGAAGGCGTTGCCATGTCCAAGCGCTCCAC GGAGAAGCTCTTCAAGTTCCTCGATATGTACGAGACGCTGCGGGACGGATTTGCGGCAATCGAGGGTTTGTTCCCTGAGGAATCAGGAAACGAGCTGAAA TCGGAAGCCGCAACGGTAAAGGGAAGAATCGGAGAAGCTGCAATCAACATATTCAACGATTTAGAGAACTCGATCAAGAACGACCGCGGGAAGACTCCGG TACCTGGAGGGGCCGTACATCCCTTGACTCGCTACACGATGAATTACTTGAAATACGCGTTCGAATACAAGGCTACCTTGGAGAATGTGTTCAGGGACCA TTCGAAAATCGAGCGGGCCGATTCCACGAGTCGGCCTCGATTCGAAGGGGATTCTTCAAGGCAAGATCAAGATAACAACAACAACTCCCCTTTTGCAAGC CAACTGGCGAGGATCATGGACTTGTTGGATACGAATTTGGAGGAGAAATCGCAGCTGTACAGGGACGTGTCGCTCTGCTGCATCTTCATGATGAATAACG GCAGATACATCTTGCAGAAGATAAAAGGCTCGCCGGAGATCCACGGCGTGATGGGGGACTCCTGGTGTAGGAGGAAGTCGTCGGATCTGAGAAATTTCCA CAAGGGTTACCAGAGGGAGACGTGGAGTAAGGTGTTAGGGTGTTTAGCGCACGAAGGGATTCAAGTTCACGGGAAAGTGGCAAAGCCGGTGCTGAAGGAA CGGTTCAAGAACTTCAACCTGATGTTTGACGAGATCTACAGGACGCAGAGTGTTTGGGTTGTGAGCGACGAGCAGCTACAGTCGGAGCTGCGGATTTCGA TATCGGCGGTGGTGATTCCGGCGTACAGGGGGTTCATGGGGAGGTTTTCTCAGTATTTTACGCCAGGGAGACAGTATGAGAAGTACATAAAGTTTCAGCC GGAGGATGTAGAGAATTATATAGAGGAGCTGTTTGATGGAAATGCCGTCATGGACGTTTCTCGCCCTTTCCTACTATTGATCGAGTGGATGGCCTCATTC GCAAGAAGAACATTATCATGTGTTGATCGTTCGACGACCAATCATCTTATCAAAGAGTGGTTTATAGGAATCACAGGATCTTCAAGAGAACGCTACACAA AGCAGTCAAGTGATACTTCGATCAGGGAGGGAAAAGACGAAGCTGCAAATTCAATTTTCAGTTTCGGGAAAGGAGAGAAGTTCTGGGAATTTCGGAGTGA TCGGATTGCTGTCATTAGTTCGAAAGGACCACGGAGATCCATCGGATTTGGAGATAGTCGTGAAGAACAAATGCCGGAGGAGGATTTTGTTGAGCTCAAG TTCAGATTATACGATGGGACCGATATTGGACCGTTTAGGTATTCTCCGGCATCCACGGTTTCCGTTTTGAAGGAAAGGATCGTCGCTGAGTGGCCAAAAG ATAAGAAAACTGCACCCAAGGGGGCAAATGACATCAAACTGATAAATGCTGGGAAAATTTTGGAGAACACCAAGACTGTTGGCCAGTGTAGAGCCCCTTT TGGAGAGCTACCAAACAGTGTTATCACGATGCATGTCGTTGTGCAGCCGTCGTTGGTGAAAGCAAAAACAGAGAAAAAGGTGGACGATGGTCCAAGAAAG AACCTATGCTCTTGTACCATATTGTGA
AA sequence Show only first row Show all	>Lus10012555 pacid=23143901 polypeptide=Lus10012555 locus=Lus10012555.g ID=Lus10012555.BGIv1.0 annot-version=v1.0 MESGDNNVNHDQEDDQAHSDNNKSDDTKYDPPPPPDDPSDPPTSDSISNLLSSNLMDSETDPDSKPAEQNEDISSPPHPEEIHITLETLSPNIDQFLSSL PEKMIEFYQEISAQQNQEVIVDKGDGDKNKNEDLTDQGEKAVGDEIKDGEKKSEDSEPEKENENEHEKENENEKKEEDVDKKSESEKKIYSIEMPEFINK FVDLVEAKITERDSDDQDDRKGGKWCKSPDHDSAFLVMVSRLTRLTTSFSGYFKSDPVHAPLANRIGFIHHKAMVYLEDEFRYLLEEQSKPVEPDSPAQG GNPEGGEEYHSPLPESESKNDQEDQYESPYPGYEEEVVTNLRKIGEAMITAGYESECCQVYMIIRRHAIDECLVQSGFEKISIDELHKMAWENLEKEIPI MTAIMKECATIHFPKEHKLVHSIFPSGNESSPSSALSSSVLFTNLARGVLIQFLNFAEGVAMSKRSTEKLFKFLDMYETLRDGFAAIEGLFPEESGNELK SEAATVKGRIGEAAINIFNDLENSIKNDRGKTPVPGGAVHPLTRYTMNYLKYAFEYKATLENVFRDHSKIERADSTSRPRFEGDSSRQDQDNNNNSPFAS QLARIMDLLDTNLEEKSQLYRDVSLCCIFMMNNGRYILQKIKGSPEIHGVMGDSWCRRKSSDLRNFHKGYQRETWSKVLGCLAHEGIQVHGKVAKPVLKE RFKNFNLMFDEIYRTQSVWVVSDEQLQSELRISISAVVIPAYRGFMGRFSQYFTPGRQYEKYIKFQPEDVENYIEELFDGNAVMDVSRPFLLLIEWMASF ARRTLSCVDRSTTNHLIKEWFIGITGSSRERYTKQSSDTSIREGKDEAANSIFSFGKGEKFWEFRSDRIAVISSKGPRRSIGFGDSREEQMPEEDFVELK FRLYDGTDIGPFRYSPASTVSVLKERIVAEWPKDKKTAPKGANDIKLINAGKILENTKTVGQCRAPFGELPNSVITMHVVVQPSLVKAKTEKKVDDGPRK NLCSCTIL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13990		ATEXO70C2	exocyst subunit exo70 family p...		Lus10012555 [exp]	0	1
AT1G69550			disease resistance protein (TI...		Lus10001038 [exp]	2.0	0.9484
AT2G26000		BRIZ2	BRAP2 RING ZnF UBP domain-cont...		Lus10035023 [exp]	2.4	0.9501
AT3G06190		ATBPM2	BTB-POZ and MATH domain 2 (.1....		Lus10041235 [exp]	4.6	0.9453
AT1G04920		ATSPS3F	sucrose phosphate synthase 3F ...		Lus10016657 [exp]	4.6	0.9511
AT5G55850		NOI	RPM1-interacting protein 4 (RI...		Lus10006250 [exp]	8.8	0.9329
AT3G30390			Transmembrane amino acid trans...		Lus10031964 [exp]	9.9	0.9430
AT5G41630			F-box/RNI-like superfamily pro...		Lus10011268 [exp]	10.2	0.9409
AT5G13800		CRN1, PPH	Co-regulated with NYE1, pheoph...		Lus10019755 [exp]	10.7	0.9493
					Lus10030943 [exp]	10.7	0.9357
AT2G01350		QPT	quinolinate phoshoribosyltrans...		Lus10018781 [exp]	11.5	0.9259

Compare expression of checked genes

Lus10012555 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.