Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14000 116 / 8e-32 NAC ANAC084 NAC domain containing protein 84 (.1) AT5G13180 105 / 3e-27 NAC VNDIP2, ANAC083, VNI2 VND-interacting 2, NAC domain containing protein 83 (.1) AT2G33480 103 / 4e-26 NAC ANAC041 NAC domain containing protein 41 (.1.2) AT5G07680 100 / 1e-24 NAC ANAC079, ATNAC4, ANAC080 Arabidopsis NAC domain containing protein 79, NAC domain containing protein 80 (.1.2) AT5G39610 99 / 1e-24 NAC ORE1, AtNAC2, ANAC092, ATNAC6 ORESARA 1, NAC domain containing protein 2, Arabidopsis NAC domain containing protein 92, NAC domain containing protein 6 (.1) AT5G61430 99 / 3e-24 NAC ANAC100, ATNAC5 NAC domain containing protein 100 (.1) AT5G53950 99 / 7e-24 NAC ATCUC2, CUC2, ANAC098 CUP-SHAPED COTYLEDON 2, Arabidopsis NAC domain containing protein 98, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT3G04060 94 / 2e-22 NAC ANAC046 NAC domain containing protein 46 (.1) AT3G04070 94 / 3e-22 NAC ANAC047 NAC domain containing protein 47 (.1.2) AT1G61110 93 / 5e-22 NAC ANAC025 NAC domain containing protein 25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041534 [exp] 343 / 3e-120 AT2G33480 125 / 1e-34 NAC domain containing protein 41 (.1.2) Lus10035174 [exp] 206 / 5e-66 AT5G14000 115 / 2e-31 NAC domain containing protein 84 (.1) Lus10032004 [exp] 204 / 3e-65 AT5G14000 113 / 2e-30 NAC domain containing protein 84 (.1) Lus10002581 [exp] 110 / 3e-29 AT5G13180 273 / 6e-93 VND-interacting 2, NAC domain containing protein 83 (.1) Lus10001809 [exp] 109 / 1e-28 AT5G13180 271 / 6e-92 VND-interacting 2, NAC domain containing protein 83 (.1) Lus10006547 [exp] 100 / 2e-24 AT3G04070 337 / 4e-114 NAC domain containing protein 47 (.1.2) Lus10011215 [exp] 99 / 4e-24 AT1G61110 305 / 1e-102 NAC domain containing protein 25 (.1) Lus10018469 [exp] 99 / 9e-24 AT1G61110 301 / 5e-101 NAC domain containing protein 25 (.1) Lus10003269 [exp] 97 / 3e-23 AT3G04070 324 / 3e-109 NAC domain containing protein 47 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G325100 [exp] 165 / 2e-50 AT5G13180 163 / 2e-49 VND-interacting 2, NAC domain containing protein 83 (.1) Potri.017G063300 [exp] 155 / 2e-46 AT5G13180 150 / 9e-45 VND-interacting 2, NAC domain containing protein 83 (.1) Potri.015G102100 [exp] 124 / 2e-34 AT5G13180 232 / 8e-77 VND-interacting 2, NAC domain containing protein 83 (.1) Potri.012G103500 [exp] 122 / 6e-34 AT5G13180 229 / 2e-75 VND-interacting 2, NAC domain containing protein 83 (.1) Potri.001G061200 [exp] 110 / 4e-29 AT5G13180 310 / 6e-107 VND-interacting 2, NAC domain containing protein 83 (.1) Potri.003G166500 [exp] 110 / 5e-29 AT5G13180 310 / 4e-107 VND-interacting 2, NAC domain containing protein 83 (.1) Potri.019G031400 [exp] 102 / 4e-25 AT3G04070 332 / 1e-112 NAC domain containing protein 47 (.1.2) Potri.012G001400 [exp] 100 / 1e-24 AT5G61430 448 / 1e-158 NAC domain containing protein 100 (.1) Potri.015G020000 [exp] 100 / 2e-24 AT5G61430 446 / 1e-157 NAC domain containing protein 100 (.1) Potri.011G046700 [exp] 99 / 5e-24 AT1G61110 331 / 8e-113 NAC domain containing protein 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10012557 pacid=23143897 polypeptide=Lus10012557 locus=Lus10012557.g ID=Lus10012557.BGIv1.0 annot-version=v1.0 ATGGATATGGAGGCGAAACCAAATATGGTTGTCAAAGAACTTCCAATTGGGTACAGATTCCGCCCTACAGATGAAGAGCTCATCGTTCATTACCTCAGAC GTAAGGTGTTGGGTCTCCCCTTGCCGGCTTCTGTCATCTCCGAGCTCGACGTTTTCCACACCCATCCTTGCTCCCTCCCAGGTAACTCTGCTTGTTGGGA GAAAAGGTACTTCTTTTGCAAGAAAGACGGAAATGTAGTGGCCGGCGCCGGCAACAGAGGAGGAGGAGTTAGTAGTTGTGGTGGAGGTGGAGGTTACTGG AAGCATACCGGGAAAGCCAGGCATATAGTTTCTTCTTCTACTACTAACAACCAATTAGTTGGGATGAGGACTAGGCTGGTTTTCCGGAAGCAGAATGCCT CTGATCATCATTCAAATACCAAGTGGGCGATGCATGAATTTTGCCTTGTGGGATTAGCCACTATCCCCTTCACGAACCAGGTGGTGAAGGTGCAATTGGG AGACTGGGTGGTCTGCAGTGTGTTCCAGAAGAAGAAAAGGCCTAGCTATAACAACAGGAAGAAACCCCCTAATCCAATTGAGTTTAGAATGGAGGAGTTG TCTGATAGAGGGCCAGAGGAAGAGGAGGAGGAGGAGCCTTGTAGTTCACCATGCTCAAGCGGGGTCACTGAGCTTTCTAATTCTACCAGTTATCTATCAA ATGGGTTAGATGGTGAGGGAGATATCAACTCATTTAATGTTAGCTTCTCTTCTTCTTCTTAG
AA sequence Show only first row Show all	>Lus10012557 pacid=23143897 polypeptide=Lus10012557 locus=Lus10012557.g ID=Lus10012557.BGIv1.0 annot-version=v1.0 MDMEAKPNMVVKELPIGYRFRPTDEELIVHYLRRKVLGLPLPASVISELDVFHTHPCSLPGNSACWEKRYFFCKKDGNVVAGAGNRGGGVSSCGGGGGYW KHTGKARHIVSSSTTNNQLVGMRTRLVFRKQNASDHHSNTKWAMHEFCLVGLATIPFTNQVVKVQLGDWVVCSVFQKKKRPSYNNRKKPPNPIEFRMEEL SDRGPEEEEEEEPCSSPCSSGVTELSNSTSYLSNGLDGEGDINSFNVSFSSSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14000	NAC	ANAC084	NAC domain containing protein ...		Lus10012557 [exp]	0	1
AT2G02061			Nucleotide-diphospho-sugar tra...		Lus10031330 [exp]	1.4	0.9531
AT3G21710			unknown protein		Lus10039666 [exp]	1.4	0.9557
AT5G10720		CKI2, AHK5	CYTOKININ INDEPENDENT 2, histi...		Lus10000105 [exp]	4.5	0.9059
AT2G47270	bHLH	bHLH151, UPB1	UPBEAT1, sequence-specific DNA...		Lus10002419 [exp]	4.6	0.9516
AT1G68920	bHLH	bHLH049, ACE1	basic helix-loop-helix (bHLH) ...		Lus10029110 [exp]	4.9	0.8988
AT4G20140		GSO1	GASSHO1, Leucine-rich repeat t...		Lus10027688 [exp]	4.9	0.9403
AT5G14020			Endosomal targeting BRO1-like ...		Lus10035167 [exp]	5.3	0.9235
AT4G23740			Leucine-rich repeat protein ki...		Lus10039321 [exp]	6.0	0.9106
AT2G17080			Arabidopsis protein of unknown...		Lus10023959 [exp]	7.5	0.8954
AT1G52800			2-oxoglutarate (2OG) and Fe(II...		Lus10008097 [exp]	9.2	0.9248

Compare expression of checked genes

Lus10012557 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.