Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17100 292 / 1e-99 SOUL heme-binding family protein (.1) AT1G78450 205 / 2e-65 SOUL heme-binding family protein (.1) AT1G78460 175 / 5e-54 SOUL heme-binding family protein (.1) AT2G37970 44 / 6e-05 SOUL-1 SOUL heme-binding family protein (.1) AT5G20140 44 / 9e-05 SOUL heme-binding family protein (.1.2) AT3G10130 42 / 0.0002 SOUL heme-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041532 [exp] 483 / 9e-175 AT1G17100 293 / 3e-101 SOUL heme-binding family protein (.1) Lus10042093 [exp] 138 / 2e-39 AT1G17100 143 / 2e-42 SOUL heme-binding family protein (.1) Lus10001247 [exp] 137 / 5e-39 AT1G17100 142 / 3e-42 SOUL heme-binding family protein (.1) Lus10013045 [exp] 96 / 2e-23 AT1G17100 124 / 5e-35 SOUL heme-binding family protein (.1) Lus10029117 [exp] 73 / 5e-15 AT1G17100 99 / 3e-25 SOUL heme-binding family protein (.1) Lus10017193 [exp] 50 / 4e-07 AT2G37970 273 / 4e-94 SOUL heme-binding family protein (.1) Lus10022712 [exp] 47 / 1e-05 AT3G10130 366 / 1e-127 SOUL heme-binding family protein (.1) Lus10014203 [exp] 45 / 2e-05 AT3G10130 290 / 4e-98 SOUL heme-binding family protein (.1) Lus10027752 [exp] 42 / 0.0003 AT2G37970 275 / 2e-94 SOUL heme-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G379000 [exp] 278 / 6e-94 AT1G17100 275 / 3e-94 SOUL heme-binding family protein (.1) Potri.001G067100 [exp] 147 / 1e-42 AT1G17100 142 / 6e-42 SOUL heme-binding family protein (.1) Potri.015G080000 [exp] 145 / 2e-42 AT1G17100 153 / 2e-46 SOUL heme-binding family protein (.1) Potri.012G088400 [exp] 141 / 8e-41 AT1G17100 155 / 3e-47 SOUL heme-binding family protein (.1) Potri.010G044200 [exp] 104 / 2e-26 AT1G17100 119 / 4e-33 SOUL heme-binding family protein (.1) Potri.016G109400 [exp] 51 / 1e-07 AT2G37970 260 / 1e-88 SOUL heme-binding family protein (.1) Potri.016G098500 [exp] 51 / 3e-07 AT3G10130 295 / 7e-100 SOUL heme-binding family protein (.1) Potri.018G073501 [exp] 42 / 0.0005 AT5G20140 528 / 0.0 SOUL heme-binding family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0319 [flax] [poplar] SHS2 PF04832 [flax] [poplar] SOUL SOUL heme-binding protein
Representative CDS sequence Show only first row Show all	>Lus10012559 pacid=23143809 polypeptide=Lus10012559 locus=Lus10012559.g ID=Lus10012559.BGIv1.0 annot-version=v1.0 ATGGGATGTTATACGATCATGCACAATGGGCTGAAAACCGGAATTGGGCTTTTCGGGGACGTGGGAGCCCATCAGCCCCCTCCTGAAACTTGCGGACCAT ATTTGTCCATCCTCCCTCTTCTTTTCACTATCCTATATCCTCCTCGTCTTAGTTCATACCCCTCCCCTCCATCCATCTCCCTTCATTTCTTCATCCAAAA TTGCGCAGCAGAAATGGCGTTATCAGTTGGAATTGGAATGTTGAAGCTATCGTTTCTACTAAGCCTGATTTCTAACGGGGCAGGCCCCTGGCATATTGCC ACGATGGAGAACACCAGAACTCTTTCAACACCCCCAAAAGTGGGTAAGTTCCCGCCGACTTGCGGCAGGATAGAGTGCCCTGAATACAGCGTCGTAGAAG CTGGGAATGGCTACGAGATTCGCCGCTATAACTCCTCCGTCTGGATTTCAACTCCTCCCATCCCCGACATCTCCCTCGTCGAGGCCACCCGCACTGCCTT CTTCTTGCTGTTTGATTACATCCAAGGGAAGAACAAGTACGGAATAACGATAGAAATGACAGGCCCTGTGATCTCCGAAGTATTGCCCAGCGACGGCCCC TTCTGCGAGTCTTCATTCACCGTGAGCTTCTACGTCCCAAAAAAGAACCAGGCGGACCCACCTGCTTCAGCTGAAGGACTCCATGTCCAGCGTTGGAAAC CATCTTATGTGGCGGTGAAGCAGTTCAGTGGGTTTGTGTCGGATTATGATGTTGGGGTGGAGGCTGCCGCTTTGCAAGCCAGCCTATCGGGGACAACTTG GGAGGATGCAATTGCCAAAAGTCACAAGGATGCAGTGTCCAAAGCTGAGTACATCGTTGCGCAGTACAATTCCCCCTTCGAATTTGAAGGCAGGGTCAAT GAGATATGGTTCCCCTTTGACATGTGA
AA sequence Show only first row Show all	>Lus10012559 pacid=23143809 polypeptide=Lus10012559 locus=Lus10012559.g ID=Lus10012559.BGIv1.0 annot-version=v1.0 MGCYTIMHNGLKTGIGLFGDVGAHQPPPETCGPYLSILPLLFTILYPPRLSSYPSPPSISLHFFIQNCAAEMALSVGIGMLKLSFLLSLISNGAGPWHIA TMENTRTLSTPPKVGKFPPTCGRIECPEYSVVEAGNGYEIRRYNSSVWISTPPIPDISLVEATRTAFFLLFDYIQGKNKYGITIEMTGPVISEVLPSDGP FCESSFTVSFYVPKKNQADPPASAEGLHVQRWKPSYVAVKQFSGFVSDYDVGVEAAALQASLSGTTWEDAIAKSHKDAVSKAEYIVAQYNSPFEFEGRVN EIWFPFDM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17100			SOUL heme-binding family prote...		Lus10012559 [exp]	0	1
AT1G17100			SOUL heme-binding family prote...		Lus10041532 [exp]	1.0	0.9805
AT3G09580			FAD/NAD(P)-binding oxidoreduct...		Lus10035530 [exp]	2.2	0.9280
AT2G33855			unknown protein		Lus10013983 [exp]	2.4	0.9513
AT1G16080			unknown protein		Lus10024094 [exp]	2.8	0.9283
AT2G33855			unknown protein		Lus10015404 [exp]	3.7	0.9193
AT1G14345			NAD(P)-linked oxidoreductase s...		Lus10037201 [exp]	4.6	0.9407
AT4G24930			thylakoid lumenal 17.9 kDa pro...		Lus10007492 [exp]	4.9	0.9178
AT3G27830		RPL12-A	ribosomal protein L12-A (.1)		Lus10013078 [exp]	6.9	0.9194
AT1G64890			Major facilitator superfamily ...		Lus10024977 [exp]	6.9	0.9007
AT4G38100			unknown protein		Lus10002647 [exp]	10.1	0.8853

Compare expression of checked genes

Lus10012559 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.