Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013471 [exp] 87 / 9e-23 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G119200 [exp] 48 / 8e-08 AT2G47485 57 / 3e-11 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012561 pacid=23143806 polypeptide=Lus10012561 locus=Lus10012561.g ID=Lus10012561.BGIv1.0 annot-version=v1.0 ATGAACCGGGGAGGCTCCCATCTCCTACGTGGCACCAACCAGGTGAGACGGAAGCTGAAGATCGTCCGGCTGGGAGGCAGAGGAAGAGGTGTACGGAAGT TCATAAAGGCAGTAAAGAAGTGTTGGAGCCAGAACAGTACCGTTGTTGATGCTCCGTTGAAGATGCTGGCTCGTTTCCACGAGGGTTACGTGCGAGTGAT GGTGAAAGTGGCGGGGGGATTTCATTGGAAGGTGGTCGGCGCCGGAGACGGTCGGATATGGGAGCTGCCGTGTGGAGACAAAGTCGATGACAGAGCGCTT CCTGAGCTGTATAGTAAGCTTCTGGCTTCTCATTCAAGAATGAGCATTGGGTGGTGTTAA
AA sequence Show only first row Show all	>Lus10012561 pacid=23143806 polypeptide=Lus10012561 locus=Lus10012561.g ID=Lus10012561.BGIv1.0 annot-version=v1.0 MNRGGSHLLRGTNQVRRKLKIVRLGGRGRGVRKFIKAVKKCWSQNSTVVDAPLKMLARFHEGYVRVMVKVAGGFHWKVVGAGDGRIWELPCGDKVDDRAL PELYSKLLASHSRMSIGWC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10012561 [exp]	0	1
AT3G06830			Plant invertase/pectin methyle...		Lus10000034 [exp]	5.1	0.6903
AT3G47440		TIP5;1	tonoplast intrinsic protein 5;...		Lus10031157 [exp]	37.1	0.6509
					Lus10041547 [exp]	50.0	0.6200
AT5G20690			Leucine-rich repeat protein ki...		Lus10013165 [exp]	64.7	0.6190
AT3G07610		IBM1	increase in bonsai methylation...		Lus10004549 [exp]	91.0	0.5998
AT3G11770			Polynucleotidyl transferase, r...		Lus10036491 [exp]	134.1	0.5365
					Lus10021816 [exp]	153.0	0.5616
AT2G36540			Haloacid dehalogenase-like hyd...		Lus10019760 [exp]	209.8	0.5385
AT2G29490		GST19, ATGSTU1	GLUTATHIONE S-TRANSFERASE 19, ...		Lus10007896 [exp]	221.1	0.5357

Compare expression of checked genes

Lus10012561 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.