Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25040 57 / 2e-10 Uncharacterised protein family (UPF0497) (.1) AT4G15630 48 / 8e-07 Uncharacterised protein family (UPF0497) (.1) AT4G16442 47 / 1e-06 Uncharacterised protein family (UPF0497) (.1) AT1G17200 47 / 2e-06 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2) AT4G15620 44 / 2e-05 Uncharacterised protein family (UPF0497) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041528 [exp] 199 / 2e-65 AT4G15620 74 / 5e-17 Uncharacterised protein family (UPF0497) (.1) Lus10035168 [exp] 139 / 2e-41 AT4G15620 78 / 8e-18 Uncharacterised protein family (UPF0497) (.1) Lus10031998 [exp] 138 / 6e-41 AT4G15620 80 / 1e-18 Uncharacterised protein family (UPF0497) (.1) Lus10032005 [exp] 89 / 2e-22 AT4G15620 65 / 1e-13 Uncharacterised protein family (UPF0497) (.1) Lus10012809 [exp] 52 / 3e-08 AT4G15630 179 / 4e-57 Uncharacterised protein family (UPF0497) (.1) Lus10043192 [exp] 48 / 4e-07 AT4G25040 61 / 3e-12 Uncharacterised protein family (UPF0497) (.1) Lus10032548 [exp] 48 / 1e-06 AT1G03700 62 / 3e-14 Uncharacterised protein family (UPF0497) (.1) Lus10042471 [exp] 47 / 2e-06 AT1G17200 242 / 6e-82 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2) Lus10026196 [exp] 46 / 5e-06 AT1G17200 241 / 1e-81 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G062100 [exp] 88 / 1e-21 AT4G25040 82 / 6e-20 Uncharacterised protein family (UPF0497) (.1) Potri.001G323700 [exp] 80 / 1e-18 AT4G15620 75 / 8e-17 Uncharacterised protein family (UPF0497) (.1) Potri.012G104300 [exp] 60 / 2e-11 AT4G25040 97 / 7e-26 Uncharacterised protein family (UPF0497) (.1) Potri.015G103600 [exp] 50 / 1e-07 AT4G25040 90 / 9e-23 Uncharacterised protein family (UPF0497) (.1) Potri.001G436400 [exp] 49 / 4e-07 AT1G17200 245 / 1e-82 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2) Potri.011G052100 [exp] 46 / 2e-06 AT4G03540 100 / 2e-27 Uncharacterised protein family (UPF0497) (.1) Potri.013G131700 [exp] 45 / 7e-06 AT1G03700 159 / 9e-50 Uncharacterised protein family (UPF0497) (.1) Potri.004G043300 [exp] 44 / 2e-05 AT4G03540 103 / 2e-28 Uncharacterised protein family (UPF0497) (.1) Potri.011G140200 [exp] 44 / 2e-05 AT1G17200 223 / 3e-74 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2) Potri.019G100300 [exp] 42 / 7e-05 AT1G03700 150 / 6e-47 Uncharacterised protein family (UPF0497) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0396 [flax] [poplar] Marvel-like PF04535 [flax] [poplar] DUF588 Domain of unknown function (DUF588)
Representative CDS sequence Show only first row Show all	>Lus10012562 pacid=23143803 polypeptide=Lus10012562 locus=Lus10012562.g ID=Lus10012562.BGIv1.0 annot-version=v1.0 ATGGAAGAAGCAATGAAACCATCAATGGCGACACAAGGGAGCCGCCATGAGCTGCTGGAACAAGGCGGATCAGCAAGGCAGAGTGGCGGCGGCACTGTTG GTGGCGCCGGTGGGTCTCCATTATTAATGGCTCAACTCGCAGCACTCAAGATAATAGCCATAATCTCCACTGTCTCTGCCGTCTGCGTCATGGTCACCAG TGACCAAAACGTCGTCGTCTACCAGATCCCTTTCTCCGCTCGCTACTCCTACGCCTCTGCTTTCAAGTTTTTGGTGGGTGCGAATGGAGTAGTTTGTGGG TTCTCAGTGTTGTCGCTCATCTGTATATGGCTGAAGGGGAAACAGAAGAGCTCTGTTGCTTCAATGCCTCCTCTCCATCTTTTTTACCTTCTGCTCCATG ACTTGGTGATGATGGGGTTTATGATGGCTGGATGTGGAGCTGCAACAGCTATTGGAGTTGTGGCGTACAGTGGGATAGAAGAGATTGGTTGGGCTGCTAT CTGTACTAATGTTAGCAACTTCTGTCACCAAATCATGGCTTCTGTTGCCTTGTCATACTTGGCCTTCTTGGCTCACTTGGCTCTCGCCATCGTCTCCGCC CGCGCACTAGCTTCTTCAACACTGTGA
AA sequence Show only first row Show all	>Lus10012562 pacid=23143803 polypeptide=Lus10012562 locus=Lus10012562.g ID=Lus10012562.BGIv1.0 annot-version=v1.0 MEEAMKPSMATQGSRHELLEQGGSARQSGGGTVGGAGGSPLLMAQLAALKIIAIISTVSAVCVMVTSDQNVVVYQIPFSARYSYASAFKFLVGANGVVCG FSVLSLICIWLKGKQKSSVASMPPLHLFYLLLHDLVMMGFMMAGCGAATAIGVVAYSGIEEIGWAAICTNVSNFCHQIMASVALSYLAFLAHLALAIVSA RALASSTL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15620			Uncharacterised protein family...		Lus10012562 [exp]	0	1
AT2G02130		PDF2.3, LCR68	low-molecular-weight cysteine-...		Lus10029544 [exp]	1.7	0.8999
AT1G17140		RIP1, ICR1	ROP INTERACTIVE PARTNER 1, int...		Lus10013708 [exp]	3.2	0.9156
AT5G26650	MADS	AGL36	AGAMOUS-like 36 (.1)		Lus10007592 [exp]	4.2	0.8659
AT2G27550		ATC	centroradialis (.1)		Lus10004884 [exp]	6.6	0.8631
AT5G01840	OFP	AtOFP1	ARABIDOPSIS THALIANA OVATE FAM...		Lus10042224 [exp]	8.1	0.8619
AT3G15790		MBD11, ATMBD11	methyl-CPG-binding domain 11 (...		Lus10002168 [exp]	9.5	0.8700
AT5G01870			Bifunctional inhibitor/lipid-t...		Lus10025148 [exp]	10.5	0.8798
					Lus10034269 [exp]	11.3	0.8009
AT3G13898			unknown protein		Lus10008387 [exp]	14.7	0.9036
AT5G59970			Histone superfamily protein (....		Lus10028464 [exp]	15.9	0.8899

Compare expression of checked genes

Lus10012562 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.