Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14020 474 / 5e-167 Endosomal targeting BRO1-like domain-containing protein (.1) AT1G73390 342 / 6e-115 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4) AT1G17940 327 / 4e-109 Endosomal targeting BRO1-like domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041527 [exp] 773 / 0 AT5G14020 483 / 6e-171 Endosomal targeting BRO1-like domain-containing protein (.1) Lus10031997 [exp] 658 / 0 AT5G14020 504 / 9e-179 Endosomal targeting BRO1-like domain-containing protein (.1) Lus10035167 [exp] 655 / 0 AT5G14020 497 / 4e-176 Endosomal targeting BRO1-like domain-containing protein (.1) Lus10031881 [exp] 352 / 9e-119 AT1G73390 704 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4) Lus10031313 [exp] 343 / 4e-115 AT1G73390 690 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4) Lus10042289 [exp] 340 / 6e-114 AT1G73390 686 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4) Lus10026368 [exp] 288 / 3e-93 AT1G73390 613 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G062000 [exp] 615 / 0 AT5G14020 524 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1) Potri.001G323600 [exp] 599 / 0 AT5G14020 521 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1) Potri.004G067400 [exp] 339 / 1e-113 AT1G73390 647 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4) Potri.017G154200 [exp] 321 / 2e-107 AT1G73390 563 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03097 [flax] [poplar] BRO1 BRO1-like domain
Representative CDS sequence Show only first row Show all	>Lus10012563 pacid=23143814 polypeptide=Lus10012563 locus=Lus10012563.g ID=Lus10012563.BGIv1.0 annot-version=v1.0 ATGGGGTGCACTGCTTCAGTTTATGCAAAGAAGAAGAAGCCAACTATAGCAGAAGCAGTTATACATGTCCCTTCACTGAGAATTCCAACCCAGTCTGATC TTCAAAGATCTCTTAAAGGGTTAGTCCCTCAGGATCTTCTAGATCGGCTATCGAGGCTTCGAAGTCAGATTGTGCTGATTGCTGAGGATACAGATGGATC TGCTATACTAGAACTCAAGAGAACATTGGAGGACTACTTGCCTATTGTCATTGGCCTTACTAAGAAAGAATATGGTCTTGAGGAGTTAGTGGAGTTCAAG TGGAAGAACTTGGAAGATGGCAGACCAGAAACCGGTTTATCAAACTGCTGGTTTGAATTGCTATCAGTTGTTCACTTGTTGGCAATGCTAACTTTGTCTG AGGCCAACTCATTAATGATCCCAAAGGATCATTCTGGTTCAGGAATAAGGGTTGTATCTTCAGACTGTAAGAGGGAAGCTGTTGATTTACTGCTGAAGGC CTCAGGGTACCTTGAATGTTGTATCCATGACGTTGCTACACATATACCACCGGAAATCAAGAAAAGTTTACCAAAAGACCTGCAAGATGGTGTGCTGGAT GCTTTGTCAATTCAAGCTCTAGGCCAGGGAACAGAAATCCAGCTGGGTTTAGCTGTTGAATGCCAGAAAGCTAGTTTGCCAGTGAAAAGGAGGCTAGCAT GTGAACAGCTGATCTATTTCAGTCAGGCTTATCAGAGCTTATCAGGAGCAGACACTAGCAACGGTTATGGAAAGAAGAATCTATGCTTTATCAAGTGGAA GTTTCTGGAAGCAAAGGCTGCAGCTTATTACTACCACGGTCTGATTCTCGACCAAGGGAATGAACCAACATGCCATGTTAGTGCAGTATGCTGTTTTGTG GCTGCGGAAGGACTTTTGACCGAGAGCAAGCGAGCCTGCTTAAGTTTCAGCCTTTCAGCTCCAGTTACCAGGTCTCCCCCACCATGGGGAGCTATGAAGC ATTTGCAGAAGAAAATCCCTGAAGTTGCATCAAGGAAGGCTGAAATGTATGGCTACCTATTGGATGAAGAAAAGGGTTTACAAGCATTGCCAGAGCTACC GGATTTTCAGCTGTCTTTAAGGCCAGATGATTATACACTTCCCGAAGCCGATTCAGCTTGGGACAGTACAAGCTGGGAAATCCAGAGGCAGCCCTTAAAA GAACACCTTGAAGGCAATTGA
AA sequence Show only first row Show all	>Lus10012563 pacid=23143814 polypeptide=Lus10012563 locus=Lus10012563.g ID=Lus10012563.BGIv1.0 annot-version=v1.0 MGCTASVYAKKKKPTIAEAVIHVPSLRIPTQSDLQRSLKGLVPQDLLDRLSRLRSQIVLIAEDTDGSAILELKRTLEDYLPIVIGLTKKEYGLEELVEFK WKNLEDGRPETGLSNCWFELLSVVHLLAMLTLSEANSLMIPKDHSGSGIRVVSSDCKREAVDLLLKASGYLECCIHDVATHIPPEIKKSLPKDLQDGVLD ALSIQALGQGTEIQLGLAVECQKASLPVKRRLACEQLIYFSQAYQSLSGADTSNGYGKKNLCFIKWKFLEAKAAAYYYHGLILDQGNEPTCHVSAVCCFV AAEGLLTESKRACLSFSLSAPVTRSPPPWGAMKHLQKKIPEVASRKAEMYGYLLDEEKGLQALPELPDFQLSLRPDDYTLPEADSAWDSTSWEIQRQPLK EHLEGN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14020			Endosomal targeting BRO1-like ...		Lus10012563 [exp]	0	1
AT1G20190		ATHEXPALPHA1.14...	EXPANSIN 11, expansin 11 (.1)		Lus10021845 [exp]	1.4	0.9737
AT3G20820			Leucine-rich repeat (LRR) fami...		Lus10010949 [exp]	2.8	0.9692
AT3G20300			Protein of unknown function (D...		Lus10009722 [exp]	4.9	0.9478
AT5G20110			Dynein light chain type 1 fami...		Lus10014484 [exp]	5.7	0.9524
AT3G28857	bHLH	PRE5	Paclobutrazol Resistance 5, ba...		Lus10023610 [exp]	6.9	0.9389
AT5G51520			Plant invertase/pectin methyle...		Lus10031712 [exp]	7.9	0.9446
AT4G00710		BSK3	BR-signaling kinase 3 (.1)		Lus10030383 [exp]	8.8	0.9257
AT5G11420			Protein of unknown function, D...		Lus10035910 [exp]	8.8	0.9450
AT4G12730		FLA2	FASCICLIN-like arabinogalactan...		Lus10001178 [exp]	9.5	0.9451
AT5G10720		CKI2, AHK5	CYTOKININ INDEPENDENT 2, histi...		Lus10020115 [exp]	12.0	0.9368

Compare expression of checked genes

Lus10012563 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.