Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041526 [exp] 447 / 9e-159 AT2G33500 115 / 1e-32 B-box type zinc finger protein with CCT domain (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G323500 [exp] 76 / 2e-15 AT2G33500 213 / 2e-64 B-box type zinc finger protein with CCT domain (.1.2) Potri.003G166000 [exp] 47 / 7e-06 AT1G28050 204 / 2e-59 B-box type zinc finger protein with CCT domain (.1) Potri.001G061800 [exp] 45 / 5e-05 AT2G33500 213 / 6e-64 B-box type zinc finger protein with CCT domain (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012564 pacid=23143822 polypeptide=Lus10012564 locus=Lus10012564.g ID=Lus10012564.BGIv1.0 annot-version=v1.0 ATGGCTTCCGCTTTTGGTTTTGATTTTAATAAATCTCGGTTTCAAGGGGATTCAGATTCTGGATTGGGTGGCAATTCCTCTGGTTTAAGGCGAGAAGTGT ATAGGCAGCTGGCGGAATTGGAATCATATCAATTGGAGATTGAGAAGAGGGAGGAAGAAGAAATGCAGCTATTACAACAGACCCCTTTTACATCTTTGTT GATGTCACCAAGTCAAGTTGGAAATAGAGAAACAACATATTGTGTTGATGATGGGGATCTTATGTGGAGCCATAATCCTGCTTTTGAAGCTGCTCAGATA TTGGATTTTCAGCTTGGGAAATCAGCAGGTTATGCTGCAGAATATCCTAATTTCAGAGCCGAGCATCACATTGATGATGCAAGTGCAACAACACGTGAGG AAGTGTCGTCTTCGTCCAGAAATAGTTGCTCCGACCAACTGTCCAAAGTGAAAGCATCCCCGGAGACTCAATACTATTCTGGGCCCGAAGAAGAGTGGAG CACTGAGGCTGAGGCAGCTGACTGGTTAAAGGCAAAAGTGGATTTTGCGGAGAACAGAGGAAATGCCATGTTGCGCTACAAGGAGAAAAAGAAGAATCGA AGGTTAATGCTTTTGTCCATTATGTTCCTTCCAGCTTCGATGGTTTGTTCATTTTTATTGAGGCGTGATTATCGAAATGGAAAAGCAGGTACGATAAGCG AATTCGATATGAGTCCAGGAAGACCAGAGCTGATTCAAGAAAGCGAGTCCAAGGTCGGTTTGCAAAGACTAGTGAGAACTGATGATGCATGGCAAGAGAA ATTACAACATCTCTTGAAATCATCTGCCTTTCCCATTCTTTTGCCTTGA
AA sequence Show only first row Show all	>Lus10012564 pacid=23143822 polypeptide=Lus10012564 locus=Lus10012564.g ID=Lus10012564.BGIv1.0 annot-version=v1.0 MASAFGFDFNKSRFQGDSDSGLGGNSSGLRREVYRQLAELESYQLEIEKREEEEMQLLQQTPFTSLLMSPSQVGNRETTYCVDDGDLMWSHNPAFEAAQI LDFQLGKSAGYAAEYPNFRAEHHIDDASATTREEVSSSSRNSCSDQLSKVKASPETQYYSGPEEEWSTEAEAADWLKAKVDFAENRGNAMLRYKEKKKNR RLMLLSIMFLPASMVCSFLLRRDYRNGKAGTISEFDMSPGRPELIQESESKVGLQRLVRTDDAWQEKLQHLLKSSAFPILLP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10012564 [exp]	0	1
AT1G70480			Domain of unknown function (DU...		Lus10013018 [exp]	1.7	0.8373
AT3G54670		ATSMC1, TTN8	TITAN8, STRUCTURAL MAINTENANCE...		Lus10013583 [exp]	2.0	0.8147
AT3G19290	bZIP	AREB2, ABF4	ABA-RESPONSIVE ELEMENT BINDING...		Lus10002399 [exp]	3.5	0.8279
AT1G01140		PKS6, CIPK9, Sn...	SNF1-RELATED PROTEIN KINASE 3....		Lus10002692 [exp]	8.1	0.7882
AT4G35440		CLCE, ATCLC-E, ...	chloride channel E (.1.2)		Lus10013857 [exp]	12.7	0.7994
AT3G44900		ATCHX4	cation/H+ exchanger 4, cation/...		Lus10037374 [exp]	15.0	0.7557
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10006740 [exp]	16.4	0.8191
AT1G14740			Protein of unknown function (D...		Lus10013248 [exp]	17.5	0.7922
AT3G27050			unknown protein		Lus10032042 [exp]	17.7	0.7979
AT2G28305		ATLOG1	LONELY GUY 1, Putative lysine ...		Lus10016096 [exp]	20.6	0.8126

Compare expression of checked genes

Lus10012564 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.