Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14030 205 / 1e-67 translocon-associated protein beta (TRAPB) family protein (.1), translocon-associated protein beta (TRAPB) family protein (.2), translocon-associated protein beta (TRAPB) family protein (.3), translocon-associated protein beta (TRAPB) family protein (.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041525 [exp] 267 / 3e-90 AT5G14030 216 / 8e-70 translocon-associated protein beta (TRAPB) family protein (.1), translocon-associated protein beta (TRAPB) family protein (.2), translocon-associated protein beta (TRAPB) family protein (.3), translocon-associated protein beta (TRAPB) family protein (.4) Lus10031996 [exp] 252 / 4e-86 AT5G14030 263 / 1e-90 translocon-associated protein beta (TRAPB) family protein (.1), translocon-associated protein beta (TRAPB) family protein (.2), translocon-associated protein beta (TRAPB) family protein (.3), translocon-associated protein beta (TRAPB) family protein (.4) Lus10035166 [exp] 250 / 2e-85 AT5G14030 264 / 7e-91 translocon-associated protein beta (TRAPB) family protein (.1), translocon-associated protein beta (TRAPB) family protein (.2), translocon-associated protein beta (TRAPB) family protein (.3), translocon-associated protein beta (TRAPB) family protein (.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G061900 [exp] 226 / 1e-75 AT5G14030 210 / 6e-69 translocon-associated protein beta (TRAPB) family protein (.1), translocon-associated protein beta (TRAPB) family protein (.2), translocon-associated protein beta (TRAPB) family protein (.3), translocon-associated protein beta (TRAPB) family protein (.4) Potri.001G323400 [exp] 217 / 3e-72 AT5G14030 215 / 2e-71 translocon-associated protein beta (TRAPB) family protein (.1), translocon-associated protein beta (TRAPB) family protein (.2), translocon-associated protein beta (TRAPB) family protein (.3), translocon-associated protein beta (TRAPB) family protein (.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF05753 [flax] [poplar] TRAP_beta Translocon-associated protein beta (TRAPB)
Representative CDS sequence Show only first row Show all	>Lus10012565 pacid=23143811 polypeptide=Lus10012565 locus=Lus10012565.g ID=Lus10012565.BGIv1.0 annot-version=v1.0 ATGGCGATCTCAGTCCCCAAGCCTTTGATCTCATTGCTGTTGGCTCTGCTGTACGTCTCGTCCGCGCTAGGTGCCTCCGATGTTCCTTTCATCGTGGCTC ACAAGAAGGCAACGCTCAACCGTCTCAAATCGGGAGCCGAACGTGTCTCCGTTTCCATCGATATCTACAATCAAGGAACCTCGACAGTATATGATGTGAG TCTTGTTGATGATCACTGGCCCAAAGATAAGTTCGATGTTGTGAGTGGTAACATATCACAATCATGGGAAAGATTAGACGCGGGTGGTCTACTGTCACTG GCTTTCGAACTTGAGGGAAAAGTGAAGGGCATGTTCTACAGCGCCCCTGCTGTTATTACATTCCGTGTCCCTACCAAGGCTGCTTTGCAGGAGGCATTTT CAACTCCAATCCTCCCCCTTGATATTCTGGCAGAGAGAGTTGCTGAGAATAAGCTTGACTTGAGGCTGTTGGCGAAATATGGATCGTTAGTGTCAGTCAT TTCTATTGTGGTTCTATTTGTTCACCTTGTGAGCTCTCCAACATCCAAATCTGCTGCTGCGAAGAAGAAACGTTAA
AA sequence Show only first row Show all	>Lus10012565 pacid=23143811 polypeptide=Lus10012565 locus=Lus10012565.g ID=Lus10012565.BGIv1.0 annot-version=v1.0 MAISVPKPLISLLLALLYVSSALGASDVPFIVAHKKATLNRLKSGAERVSVSIDIYNQGTSTVYDVSLVDDHWPKDKFDVVSGNISQSWERLDAGGLLSL AFELEGKVKGMFYSAPAVITFRVPTKAALQEAFSTPILPLDILAERVAENKLDLRLLAKYGSLVSVISIVVLFVHLVSSPTSKSAAAKKKR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14030			translocon-associated protein ...		Lus10012565 [exp]	0	1
AT1G51980			Insulinase (Peptidase family M...		Lus10038262 [exp]	5.9	0.9393
AT2G16595			Translocon-associated protein ...		Lus10007577 [exp]	13.3	0.9164
AT5G48490			Bifunctional inhibitor/lipid-t...		Lus10038233 [exp]	16.3	0.9187
AT2G47470		ATPDI11, ATPDIL...	UNFERTILIZED EMBRYO SAC 5, MAT...		Lus10010274 [exp]	16.5	0.9002
AT1G70770			Protein of unknown function DU...		Lus10003709 [exp]	21.9	0.9144
AT5G67500		VDAC2, ATVDAC2	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10007739 [exp]	23.4	0.9149
AT5G60640		ATPDI2, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10022581 [exp]	24.8	0.8940
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10024626 [exp]	28.1	0.9147
AT3G19850			Phototropic-responsive NPH3 fa...		Lus10012901 [exp]	28.6	0.9148
					Lus10024615 [exp]	34.5	0.9145

Compare expression of checked genes

Lus10012565 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.