Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07860 205 / 3e-68 Ubiquitin-like superfamily protein (.1) AT5G25340 81 / 3e-19 Ubiquitin-like superfamily protein (.1) AT4G32270 79 / 4e-18 Ubiquitin-like superfamily protein (.1.2) AT1G80060 69 / 2e-14 Ubiquitin-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041524 [exp] 332 / 1e-117 AT3G07860 184 / 3e-59 Ubiquitin-like superfamily protein (.1) Lus10006187 [exp] 86 / 3e-20 AT4G32270 141 / 5e-41 Ubiquitin-like superfamily protein (.1.2) Lus10041040 [exp] 85 / 7e-20 AT5G25340 139 / 2e-40 Ubiquitin-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G015002 [exp] 276 / 2e-96 AT3G07860 178 / 1e-57 Ubiquitin-like superfamily protein (.1) Potri.006G255500 [exp] 80 / 3e-18 AT5G25340 164 / 9e-50 Ubiquitin-like superfamily protein (.1) Potri.011G105150 [exp] 39 / 0.001 AT1G45616 405 / 3e-125 receptor like protein 6 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012567 pacid=23143862 polypeptide=Lus10012567 locus=Lus10012567.g ID=Lus10012567.BGIv1.0 annot-version=v1.0 ATGGAGGAAGTAGGAAGCGCTTCAGCTTCAAGGGTTGAAGAAGGAGGCGATGACATTGGAAGTTACAACAGCAGCAACGTGAAGAAAGCCAAACTTCAAT CCACTCTGGCAGCTCTTCTAGACGATCCCGTACTATCCGATGTCCCCAAGAACCCTTCTCTTTCCGACGTCGACACCCTTATCAGCATCGAATTCGGCAG CGCCATGCGAGTCTCCGTCCTTAAACTCGACGGCACTACTTTTGATGTGGCGGTGATGAATTCGGCTACGGTGAAGGATTTGAAGCTAGCAATTAAGAAG AAAGTCACTGAAATGGAGCAGTCAAAGATGGGTCATCGTCATATTTCATGGAGGCACATTTGGGCTAATTTTGGCCTTTCACACCAAAACCAAAAGCTTC TCGATGATAGCTCTGCCCTTCAGGATTTCGGCATACGCAACAACTCTCAGGTGAATTTTGTACCCTATGTTGTGTCAAAGGCTTCTGGGAAGCACTCCAA GAGGATAAAACACCGGTTTTTCCATGGCCTTATTCGTGGATAG
AA sequence Show only first row Show all	>Lus10012567 pacid=23143862 polypeptide=Lus10012567 locus=Lus10012567.g ID=Lus10012567.BGIv1.0 annot-version=v1.0 MEEVGSASASRVEEGGDDIGSYNSSNVKKAKLQSTLAALLDDPVLSDVPKNPSLSDVDTLISIEFGSAMRVSVLKLDGTTFDVAVMNSATVKDLKLAIKK KVTEMEQSKMGHRHISWRHIWANFGLSHQNQKLLDDSSALQDFGIRNNSQVNFVPYVVSKASGKHSKRIKHRFFHGLIRG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07860			Ubiquitin-like superfamily pro...		Lus10012567 [exp]	0	1
AT1G72660			P-loop containing nucleoside t...		Lus10037676 [exp]	13.6	0.8073
AT4G35780		STY17	serine/threonine/tyrosine kina...		Lus10018895 [exp]	23.1	0.7956
AT5G17930			MIF4G domain-containing protei...		Lus10014048 [exp]	42.9	0.7734
AT3G06660			PAPA-1-like family protein / z...		Lus10016899 [exp]	51.9	0.7651
AT3G51500			unknown protein		Lus10017918 [exp]	60.5	0.7727
AT3G01330	E2F_DP	E2FF, E2L2, DEL...	E2F-LIKE 2, DP-E2F-like protei...		Lus10005840 [exp]	63.9	0.7711
AT5G46400		ATPRP39-2 ,AT P...	Tetratricopeptide repeat (TPR)...		Lus10015257 [exp]	66.0	0.7703
AT5G46190			RNA-binding KH domain-containi...		Lus10023300 [exp]	66.7	0.7685
AT1G68550	AP2_ERF	CRF10	cytokinin response factor 10, ...		Lus10034316 [exp]	102.0	0.7369
AT1G15720	MYB	TRFL5	TRF-like 5 (.1)		Lus10042209 [exp]	103.7	0.7483

Compare expression of checked genes

Lus10012567 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.