Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14060 819 / 0 CARAB-AK-LYS Aspartate kinase family protein (.1.2) AT3G02020 818 / 0 AK3 aspartate kinase 3 (.1) AT5G13280 790 / 0 AK1, AK-LYS1 aspartate kinase 1 (.1) AT4G19710 169 / 3e-44 AK-HSDHII, AK-HSDH ,AK-HSDH II aspartate kinase-homoserine dehydrogenase ii (.1.2) AT1G31230 164 / 9e-43 AK-HSDHI ,AK-HSDH I aspartate kinase-homoserine dehydrogenase i (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041523 [exp] 1150 / 0 AT5G14060 824 / 0.0 Aspartate kinase family protein (.1.2) Lus10030339 [exp] 167 / 2e-43 AT4G19710 1415 / 0.0 aspartate kinase-homoserine dehydrogenase ii (.1.2) Lus10041071 [exp] 155 / 9e-40 AT4G19710 1373 / 0.0 aspartate kinase-homoserine dehydrogenase ii (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G236800 [exp] 893 / 0 AT3G02020 845 / 0.0 aspartate kinase 3 (.1) Potri.014G145700 [exp] 885 / 0 AT5G14060 805 / 0.0 Aspartate kinase family protein (.1.2) Potri.013G099500 [exp] 177 / 4e-47 AT4G19710 1425 / 0.0 aspartate kinase-homoserine dehydrogenase ii (.1.2) Potri.019G071700 [exp] 169 / 2e-44 AT4G19710 1470 / 0.0 aspartate kinase-homoserine dehydrogenase ii (.1.2) Potri.004G180600 [exp] 76 / 2e-17 AT3G02020 71 / 2e-16 aspartate kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0070 [flax] [poplar] ACT PF01842 [flax] [poplar] ACT ACT domain CL0070 [flax] [poplar] PF00696 [flax] [poplar] AA_kinase Amino acid kinase family
Representative CDS sequence Show only first row Show all	>Lus10012568 pacid=23143834 polypeptide=Lus10012568 locus=Lus10012568.g ID=Lus10012568.BGIv1.0 annot-version=v1.0 ATGTCGGCCGCATTGCATTTCTCCGGTCCCAGAGTTTCCCGCCCTATTAATCTTCCGGACACTGCAGCTCTTTCCTGTTCCAGCCGGTTCCGTTTCGCGA ATTCCGTCGCCGTTACATCCGGATTCTGCGAAAGTTCCTGGCTTTCCTGTAGCCGGAGGGTTTTACCACGAATTGCTTGCGATGCTCGATCTGTGGACGT GCTGGAAAAGGTCATTGCGACGGATCAGTTGGACGGCGGAGCTGAGACTGAGAAGCAGTTCTCATGTGTTATGAAGTTCGGCGGCTCCTCCCTGGCCTCC GCCGAGAGGATGAGGGAGGTTGCTCAGCTAATCCAGAGTTTTCCGGAAGAAAACCCTATCATTGTCTTGTCTGCAATGGGAAAGACGACCAATAAACTTC TTTTGGCCGGGGAAAAAGCAGTGAGCTGTGGTGTCACTAACGTAGAACTTATTGATGAACTTACTTTCATTAGGGATTTGCATATCCGAACTCTAGAGGA GCTTGGATTGGAGAAGGTGGTTGTTGCCAAGCACCTGGAAGAACTAGAACAACTCTTAAAGGGAGTTGCTATGATGAAAGAATTGACTCCACGAACAAGA GACTACCTAGTTTCCTTTGGAGAGTGTATGTCCACAAGAATTTTTGCAGCGTATATGAATATGATTGGTACTAAAGCACGTCAGTATGATGCATTCGATG TTGGTTTCATCACAACAGATGACTTCACGAATGCAGACATACTTGAAGCAACTTATCCTGCTGTTGCAAAGAGGTTACATGGAGATTGGATTAGCGATCC TGCAATACCGATAGTTACTGGGTTTCTCGGAAAGGGCTGGAAGTCCTGTGCCATTACAACCCTGGGCAGGGGCGGCAGTGATTTAACTGCTACAACCATT GGGAAAGCTTTGGGTTTGCGAGAAATTCAGGTGTGGAAGGATGTTGATGGAGTTTTGACGTGTGACCCTAATATATATCCCAAAGCAGAGCCTGTTCCAT TGTTGACTTTCGACGAAGCAGCAGAACTTGCATATTTTGGTGCCCAGGTTCTGCATCCGCAATCCATGAGACCTGCTAGGGAAGGTGATATTCCAGTTAG AGTTAAGAATTCTTACAACCCGAATGCTCCAGGAACTCTTATTACAAGAACAAGGGACATGAGTAAGGCTGTATTAACTAGTATAGTTTTGAAACGGAAC GTTACTATGTTGGACATTGTTAGTACTCGTATGCTAGGTCAATTTGGCTTTCTAGCAAAGGTGTTTTCAACCTTTGAAGATTTAGGAATATCAGTGGATG TTGTAGCTACCAGTGAAGTTAGTATCTCACTGACGCTTGACCCATCTAAGCTATGGAGCAGAGAGCTGATTCAGCAGGCAAGCATACCCAATGAACTTGA TCACGTGGTGGAAGAATTGGAGAAAATTGCCGTAGTGAACCTTCTTCAGCACAGATCAATAATATCTTTGATCGGGAACGTGCAGAGGTCCTCGCTGATA CTAGAGAAGGTGTTCAAAGTTCTTAGAGCCAACGGAGTTAACGTTCAGATGATCTCCCAGGGTGCTTCTAAGGTGAACATCTCGTTGATCGTCAACGACA ATGAATCAGAGCAGTGCGTAAGAGCCCTCCATGCAGCCTTCTTCGAGACCGACATTGCAGAACTAGATTGTGAACATGGCGGCACTTTTAACGGCAACGG TGCAGCCTCTAAATGA
AA sequence Show only first row Show all	>Lus10012568 pacid=23143834 polypeptide=Lus10012568 locus=Lus10012568.g ID=Lus10012568.BGIv1.0 annot-version=v1.0 MSAALHFSGPRVSRPINLPDTAALSCSSRFRFANSVAVTSGFCESSWLSCSRRVLPRIACDARSVDVLEKVIATDQLDGGAETEKQFSCVMKFGGSSLAS AERMREVAQLIQSFPEENPIIVLSAMGKTTNKLLLAGEKAVSCGVTNVELIDELTFIRDLHIRTLEELGLEKVVVAKHLEELEQLLKGVAMMKELTPRTR DYLVSFGECMSTRIFAAYMNMIGTKARQYDAFDVGFITTDDFTNADILEATYPAVAKRLHGDWISDPAIPIVTGFLGKGWKSCAITTLGRGGSDLTATTI GKALGLREIQVWKDVDGVLTCDPNIYPKAEPVPLLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLITRTRDMSKAVLTSIVLKRN VTMLDIVSTRMLGQFGFLAKVFSTFEDLGISVDVVATSEVSISLTLDPSKLWSRELIQQASIPNELDHVVEELEKIAVVNLLQHRSIISLIGNVQRSSLI LEKVFKVLRANGVNVQMISQGASKVNISLIVNDNESEQCVRALHAAFFETDIAELDCEHGGTFNGNGAASK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14060		CARAB-AK-LYS	Aspartate kinase family protei...		Lus10012568 [exp]	0	1
AT4G19710		AK-HSDHII, AK-H...	aspartate kinase-homoserine de...		Lus10041071 [exp]	4.5	0.9551
AT3G59710			NAD(P)-binding Rossmann-fold s...		Lus10034835 [exp]	4.9	0.9582
AT1G43800			Plant stearoyl-acyl-carrier-pr...		Lus10018926 [exp]	6.0	0.9568
AT3G28730		NFD, SSRP1, ATH...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10042065 [exp]	6.0	0.9490
AT5G10240		ASN3	asparagine synthetase 3 (.1.2)		Lus10041698 [exp]	7.1	0.9350
AT2G30970		ASP1	aspartate aminotransferase 1 (...		Lus10020720 [exp]	10.2	0.9457
AT2G36530		ENO2, LOS2	LOW EXPRESSION OF OSMOTICALLY ...		Lus10038904 [exp]	10.5	0.9555
AT3G08030			Protein of unknown function, D...		Lus10019723 [exp]	12.0	0.9529
AT1G33970			P-loop containing nucleoside t...		Lus10005299 [exp]	12.2	0.9171
AT3G63510			FMN-linked oxidoreductases sup...		Lus10016407 [exp]	12.3	0.9065

Compare expression of checked genes

Lus10012568 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.