Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26740 95 / 1e-25 CCL CCR-like (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041522 [exp] 199 / 2e-67 AT3G26740 95 / 3e-26 CCR-like (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G066400 [exp] 104 / 9e-30 AT3G26740 112 / 2e-32 CCR-like (.1) Potri.003G163402 [exp] 97 / 9e-27 AT3G26740 94 / 1e-25 CCR-like (.1) Potri.014G145500 [exp] 82 / 4e-21 AT3G26740 65 / 2e-14 CCR-like (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07207 [flax] [poplar] Lir1 Light regulated protein Lir1
Representative CDS sequence Show only first row Show all	>Lus10012569 pacid=23143899 polypeptide=Lus10012569 locus=Lus10012569.g ID=Lus10012569.BGIv1.0 annot-version=v1.0 ATGCAGTCAACTCCATGCAGCATATCAATAGCAAACCCCATTGTTCCCCTCAATAAACCTGCTCATTATTGGTCCTGTACTCAATTGACAGCACATAGGC CATCGCCGGCCAGTAGGATCGCAACAATATTTAGAGCAACTTCTGTCAATTACAACTCCGCCGTCTCTGTGTTTCCAGCAGAGGCTTGCGAGACTGTGGG CGGAGATGCGTGCTTGGCAGATATGTACCCAGAAGTGAAGCTGCAGCAGATCAAAGCGGATGACGAATGCAGGATGGCGGCTAGAGTTGATTCAGACATT GTTGTTGACAGAGAGTATTTGGAGTACAATGATTCAAAGACGGTGTTCTTAGCTGAAGCGTGTGATGATCTTGGAGGAGAATTCTGCAGCAGCGAGTACC AGACTGGAGTTTATTAG
AA sequence Show only first row Show all	>Lus10012569 pacid=23143899 polypeptide=Lus10012569 locus=Lus10012569.g ID=Lus10012569.BGIv1.0 annot-version=v1.0 MQSTPCSISIANPIVPLNKPAHYWSCTQLTAHRPSPASRIATIFRATSVNYNSAVSVFPAEACETVGGDACLADMYPEVKLQQIKADDECRMAARVDSDI VVDREYLEYNDSKTVFLAEACDDLGGEFCSSEYQTGVY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26740		CCL	CCR-like (.1)		Lus10012569 [exp]	0	1
AT3G02100			UDP-Glycosyltransferase superf...		Lus10003454 [exp]	2.2	0.8394
AT2G33830			Dormancy/auxin associated fami...		Lus10025446 [exp]	3.7	0.8555
AT1G75220		AtERDL6	ERD6-like 6, Major facilitator...		Lus10001656 [exp]	4.2	0.8343
AT4G03140			NAD(P)-binding Rossmann-fold s...		Lus10005927 [exp]	5.2	0.8236
AT5G38510			Rhomboid-related intramembrane...		Lus10023145 [exp]	6.9	0.8569
AT1G27510			Protein of unknown function (D...		Lus10027696 [exp]	7.1	0.8493
AT5G50350			unknown protein		Lus10034861 [exp]	10.7	0.7179
AT5G44650		Y3IP1, AtCEST	Ycf3-interacting protein 1, Ar...		Lus10038385 [exp]	13.1	0.8449
AT4G29670		ACHT2	atypical CYS HIS rich thiored...		Lus10007994 [exp]	13.9	0.8295
AT5G22920			CHY-type/CTCHY-type/RING-type ...		Lus10023914 [exp]	15.3	0.7831

Compare expression of checked genes

Lus10012569 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.