Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03220 327 / 4e-105 ATFUT1, ATFT1, FT1, MUR2 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) AT1G14100 312 / 5e-100 FUT8 fucosyltransferase 8 (.1) AT2G03210 304 / 1e-96 ATFUT2, FUT2 fucosyltransferase 2 (.1) AT2G15390 297 / 2e-94 ATFUT4, FUT4 fucosyltransferase 4 (.1.2) AT1G14070 296 / 3e-94 FUT7 fucosyltransferase 7 (.1) AT1G14080 289 / 4e-91 ATFUT6, FUT6 fucosyltransferase 6 (.1) AT2G15370 287 / 4e-90 ATFUT5, FUT5 ARABIDOPSIS FUCOSYLTRANSFERASE 5, fucosyltransferase 5 (.1) AT1G14110 281 / 2e-88 ATFUT9, FUT9 fucosyltransferase 9 (.1) AT2G15350 276 / 6e-87 ATFUT10, FUT10 fucosyltransferase 10 (.1) AT1G74420 239 / 3e-72 ATFUT3, FUT3 fucosyltransferase 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041645 [exp] 558 / 0 AT2G03220 315 / 2e-101 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10041644 [exp] 503 / 2e-174 AT2G03220 379 / 7e-126 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10024076 [exp] 448 / 6e-153 AT2G03220 374 / 5e-124 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10041642 [exp] 390 / 5e-130 AT2G03220 454 / 8e-155 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10026125 [exp] 380 / 1e-128 AT2G03210 305 / 6e-100 fucosyltransferase 2 (.1) Lus10008693 [exp] 378 / 8e-128 AT2G03210 305 / 6e-100 fucosyltransferase 2 (.1) Lus10026128 [exp] 355 / 9e-117 AT2G03220 395 / 4e-132 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10008696 [exp] 350 / 4e-114 AT2G03220 504 / 3e-174 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10013549 [exp] 324 / 3e-104 AT2G03220 357 / 4e-117 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G191500 [exp] 379 / 2e-125 AT2G03220 570 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.003G191200 [exp] 367 / 6e-121 AT2G03220 570 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.001G034100 [exp] 362 / 5e-119 AT2G03220 560 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.001G033800 [exp] 347 / 2e-111 AT2G03220 524 / 3e-180 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.003G191401 [exp] 343 / 6e-110 AT2G03220 555 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.008G090000 [exp] 339 / 9e-110 AT2G03220 744 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.003G191301 [exp] 332 / 6e-106 AT2G03220 524 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03254 [flax] [poplar] XG_FTase Xyloglucan fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10012571 pacid=23143869 polypeptide=Lus10012571 locus=Lus10012571.g ID=Lus10012571.BGIv1.0 annot-version=v1.0 ATGAAGCGTGGAAGAAGGCCGCTACTGGAATGGATCATCACTTGTTGTTCCTACAAGTTGAGATTCATGGCGCTACTGCTGGCTTTCCCCGCCGTCGCAT ATCTTCTACTCATAATCTCCTCCCAACATCTCCCAAACACTCGATCGCCGTATGATCATGATTTGCCATCGACGACGCTCGCTTTCCCACGCTTTTCATG CCTCAGCCGCCGCCACCAACGAAACTTTTCCCTCCAACCGTCTCCATACTTGCTCTCCAAGCTCCGACGATACGAAAATCTGCACCATCGCTGCGGCCCG CTTTCCGAATCCTTCCGTCAAATGATGAGCACTACTAATGATGATGATGATGATAATAATAATAATAAGTACTGCAAATACATAGTGTACACACCTTCGC GAGGGCTCGGAAACAGAATGCTAGGCCTTGCCTCTACTTTCCTCTACGCCCTTCTCACCGATCGGGTTCTCCTTGTCGATTTCGTTCCCAATATGGAACA CCTCTTCTGCGAGCCCTTCCCCAATTCGACGTGGTTCTTGCCCGAATCCTTCCCCTTACGAAATACATTCCATTTCCGGGATGTTTATAGCTACGGGAAC TTGCTGAGGAATAAAGAGCAAGAAACCTCGAATTCGGCACCATCACTCGTCCGGCTCTTTCTCCACGACACGTACGACGACTACGACAAGCTGTTCTTCA AAGACGAGAAGCAGGAATTTCTGGAGGGAGTTCCATGGCTGGTTCTGATTTCAACTCAGTATTTCGTCCCCTGCATCTTCCACATGCACACCTTCCGTGC ACAACTGGAGAAGTGGTTCCCTGGTGACCAAGTGGAGAATGTTTTCCACCATTTGGGGAATTACCTATTCAACCCTTCCAATCAAGCTTGGGATCTCATT ACAGATTTCTACGAATCAAACTTGGCCAAAGCAGAGGAGATAATTGTGATGCAGATTAGGGTTTTCGAGCCGAAGAAAACTCCAACTTCCCTTGTCATGA AACGGTTCTTAGCCTGCACTCACACCAACAAAATCCTTCCTGATCATCGCTTAGAGTTAGAGGAGATACGAAACCAATCATCATCATCTTCGAAGGCAAT CCTAGTAGCTTCTTTGTCAAGAAAATTCTACGAGGAGATGAAGTCCATATATGGGAATGAGGAAGAGAAATTTGGTGTTTACCAGGCGAGTCATGAAGAA AAGGAGCACCATGGATATGGTAACGCTTCTCACAGCATGAGGGCATGGGTGGATATGTATCTCTTGAGTATGAGCCATGTGTTGGTGACAAGCAGGTTTT CTACATTCGGGTATGTGGCTGCTGGGCTTGGTGGGATCAGCCCATGGATTGTTATGGTTCCTCGTTATGTCAATGAGGCTGGGCTTCCTGAGCCCAGTTG TAAGAGGGCCGTGAATATGGAGCCGTGTTTTCTTCGCCCGCCTGGCTTTGCATATCCAGATCAAACTGCAGGGTTTGTTGGGCCTCATACAGTTGCTCGT TGCGAACATGCGCCCTGGAGAGGACTCAAGCTTGTCCGCTCGGGGAGGAGACTACTATGGCGCCGGAAGCCATTTCGTTCAAAAATAAATGTAGATCTAA TATTAAGAATGCCAAGGTCAAATATGTTGCGGGACAGAGATCCAAAGTTGCTGTGA
AA sequence Show only first row Show all	>Lus10012571 pacid=23143869 polypeptide=Lus10012571 locus=Lus10012571.g ID=Lus10012571.BGIv1.0 annot-version=v1.0 MKRGRRPLLEWIITCCSYKLRFMALLLAFPAVAYLLLIISSQHLPNTRSPYDHDLPSTTLAFPRFSCLSRRHQRNFSLQPSPYLLSKLRRYENLHHRCGP LSESFRQMMSTTNDDDDDNNNNKYCKYIVYTPSRGLGNRMLGLASTFLYALLTDRVLLVDFVPNMEHLFCEPFPNSTWFLPESFPLRNTFHFRDVYSYGN LLRNKEQETSNSAPSLVRLFLHDTYDDYDKLFFKDEKQEFLEGVPWLVLISTQYFVPCIFHMHTFRAQLEKWFPGDQVENVFHHLGNYLFNPSNQAWDLI TDFYESNLAKAEEIIVMQIRVFEPKKTPTSLVMKRFLACTHTNKILPDHRLELEEIRNQSSSSSKAILVASLSRKFYEEMKSIYGNEEEKFGVYQASHEE KEHHGYGNASHSMRAWVDMYLLSMSHVLVTSRFSTFGYVAAGLGGISPWIVMVPRYVNEAGLPEPSCKRAVNMEPCFLRPPGFAYPDQTAGFVGPHTVAR CEHAPWRGLKLVRSGRRLLWRRKPFRSKINVDLILRMPRSNMLRDRDPKLL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10012571 [exp]	0	1
AT2G18370			Bifunctional inhibitor/lipid-t...		Lus10001431 [exp]	4.0	0.9837
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Lus10010373 [exp]	5.5	0.9797
					Lus10003840 [exp]	5.7	0.9837
					Lus10005396 [exp]	6.9	0.9837
AT2G39210			Major facilitator superfamily ...		Lus10021512 [exp]	7.1	0.9715
AT5G63160		BT1	BTB and TAZ domain protein 1 (...		Lus10033038 [exp]	7.9	0.9622
					Lus10022573 [exp]	8.0	0.9837
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10006687 [exp]	8.1	0.9104
					Lus10006661 [exp]	8.9	0.9837
					Lus10017557 [exp]	9.6	0.9504

Compare expression of checked genes

Lus10012571 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.