Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26790 88 / 8e-22 B3 FUS3 FUSCA 3, AP2/B3-like transcriptional factor family protein (.1) AT3G24650 66 / 1e-13 B3 SIS10, ABI3 SUGAR INSENSITIVE 10, ABSCISIC ACID INSENSITIVE 3, ABA INSENSITIVE 3, AP2/B3-like transcriptional factor family protein (.1) AT2G30470 60 / 2e-11 B3 HSI2, VAL1 VP1/ABI3-LIKE 1, high-level expression of sugar-inducible gene 2 (.1) AT1G28300 58 / 1e-10 B3 LEC2 LEAFY COTYLEDON 2, AP2/B3-like transcriptional factor family protein (.1) AT4G32010 55 / 2e-09 B3 HSL1, HSI2-L1, VAL2 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) AT4G21550 45 / 4e-06 B3 HSI2-L2, VAL3 VP1/ABI3-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041521 [exp] 103 / 2e-27 AT3G26790 255 / 1e-83 FUSCA 3, AP2/B3-like transcriptional factor family protein (.1) Lus10012572 [exp] 102 / 3e-27 AT3G26790 259 / 4e-85 FUSCA 3, AP2/B3-like transcriptional factor family protein (.1) Lus10022820 [exp] 67 / 6e-14 AT3G24650 313 / 1e-100 SUGAR INSENSITIVE 10, ABSCISIC ACID INSENSITIVE 3, ABA INSENSITIVE 3, AP2/B3-like transcriptional factor family protein (.1) Lus10011888 [exp] 62 / 3e-12 AT3G24650 312 / 6e-96 SUGAR INSENSITIVE 10, ABSCISIC ACID INSENSITIVE 3, ABA INSENSITIVE 3, AP2/B3-like transcriptional factor family protein (.1) Lus10011245 [exp] 61 / 1e-11 AT2G30470 399 / 1e-122 VP1/ABI3-LIKE 1, high-level expression of sugar-inducible gene 2 (.1) Lus10018440 [exp] 58 / 2e-10 AT4G32010 487 / 1e-158 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Lus10025142 [exp] 56 / 9e-10 AT4G32010 794 / 0.0 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Lus10025226 [exp] 55 / 2e-09 AT4G32010 808 / 0.0 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Lus10022741 [exp] 55 / 2e-09 AT4G32010 748 / 0.0 VP1/ABI3-LIKE 2, HSI2-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G322700 [exp] 89 / 4e-22 AT3G26790 279 / 3e-93 FUSCA 3, AP2/B3-like transcriptional factor family protein (.1) Potri.017G061200 [exp] 86 / 4e-21 AT3G26790 288 / 8e-97 FUSCA 3, AP2/B3-like transcriptional factor family protein (.1) Potri.002G252000 [exp] 62 / 5e-12 AT3G24650 499 / 2e-167 SUGAR INSENSITIVE 10, ABSCISIC ACID INSENSITIVE 3, ABA INSENSITIVE 3, AP2/B3-like transcriptional factor family protein (.1) Potri.013G157500 [exp] 57 / 2e-10 AT2G30470 767 / 0.0 VP1/ABI3-LIKE 1, high-level expression of sugar-inducible gene 2 (.1) Potri.019G130300 [exp] 56 / 5e-10 AT2G30470 757 / 0.0 VP1/ABI3-LIKE 1, high-level expression of sugar-inducible gene 2 (.1) Potri.006G108300 [exp] 56 / 9e-10 AT4G32010 743 / 0.0 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Potri.016G136500 [exp] 56 / 9e-10 AT4G32010 789 / 0.0 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Potri.011G043600 [exp] 54 / 2e-09 AT4G32010 479 / 5e-157 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Potri.004G035300 [exp] 53 / 4e-09 AT4G32010 483 / 3e-158 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Potri.004G045800 [exp] 52 / 1e-08 AT1G28300 201 / 2e-60 LEAFY COTYLEDON 2, AP2/B3-like transcriptional factor family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012573 pacid=23143867 polypeptide=Lus10012573 locus=Lus10012573.g ID=Lus10012573.BGIv1.0 annot-version=v1.0 ATGACGACGAGGAAACCGAGGCGTGTTGGAAGGGAACAGGTGGCCGCAACCCGACCACCGATGATGGGCGTCCATCGGGTCAGGGGGTTGACCCGGAGGC ATCCTTCAGCTGGCCACCTCCTCCTCCTTCCATCATACTGCAGAGACACACCTGCCACAGAGACGCACCTGCCAGTACTAGAATCAAAGGAAGGGTTCCC AATCACCATGTATGACTTGGACGGTTCCCACGTCTGGAGCTTCAAGTACAGGTATTGGCCAAATAAAAACAGCAGGATGTACGTCTTGGAGAAAACTGGG ATGAGTACAATTGCTGGTGGTAAGGTAGATACTAGGATGTGGGTTTCAGTTTCAGGTAATACTTGCAATGACGAGATGTCTAACTAA
AA sequence Show only first row Show all	>Lus10012573 pacid=23143867 polypeptide=Lus10012573 locus=Lus10012573.g ID=Lus10012573.BGIv1.0 annot-version=v1.0 MTTRKPRRVGREQVAATRPPMMGVHRVRGLTRRHPSAGHLLLLPSYCRDTPATETHLPVLESKEGFPITMYDLDGSHVWSFKYRYWPNKNSRMYVLEKTG MSTIAGGKVDTRMWVSVSGNTCNDEMSN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26790	B3	FUS3	FUSCA 3, AP2/B3-like transcrip...		Lus10012573 [exp]	0	1
AT2G03630			unknown protein		Lus10029645 [exp]	1.4	0.9994
AT4G38590		BGAL14	beta-galactosidase 14 (.1.2)		Lus10005070 [exp]	1.7	0.9841
					Lus10034143 [exp]	2.0	0.9994
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Lus10026697 [exp]	2.8	0.9830
AT5G09550			GDP dissociation inhibitor fam...		Lus10035634 [exp]	3.9	0.9753
					Lus10014474 [exp]	5.9	0.9430
AT2G20515			unknown protein		Lus10024890 [exp]	17.0	0.9211
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Lus10039010 [exp]	19.3	0.8735
					Lus10038209 [exp]	26.3	0.9459
					Lus10014949 [exp]	27.4	0.9355

Compare expression of checked genes

Lus10012573 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.