Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14040 540 / 0 PHT3;1 phosphate transporter 3;1 (.1) AT3G48850 475 / 9e-169 PHT3;2 phosphate transporter 3;2 (.1) AT2G17270 293 / 1e-97 PHT3;3 phosphate transporter 3;3 (.1) AT5G48970 69 / 1e-12 Mitochondrial substrate carrier family protein (.1) AT4G01100 62 / 1e-10 ADNT1 adenine nucleotide transporter 1 (.1.2) AT1G25380 61 / 5e-10 ATNDT2 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) AT4G11440 61 / 6e-10 Mitochondrial substrate carrier family protein (.1) AT3G21390 59 / 1e-09 Mitochondrial substrate carrier family protein (.1) AT3G53940 57 / 1e-08 Mitochondrial substrate carrier family protein (.1) AT5G51050 55 / 4e-08 APC2 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041519 [exp] 687 / 0 AT5G14040 586 / 0.0 phosphate transporter 3;1 (.1) Lus10036014 [exp] 535 / 0 AT5G14040 572 / 0.0 phosphate transporter 3;1 (.1) Lus10016720 [exp] 530 / 0 AT5G14040 568 / 0.0 phosphate transporter 3;1 (.1) Lus10026554 [exp] 288 / 2e-95 AT2G17270 472 / 8e-169 phosphate transporter 3;3 (.1) Lus10013839 [exp] 285 / 5e-94 AT2G17270 469 / 2e-167 phosphate transporter 3;3 (.1) Lus10035975 [exp] 264 / 9e-84 AT2G17270 398 / 7e-137 phosphate transporter 3;3 (.1) Lus10032365 [exp] 68 / 2e-12 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10033948 [exp] 67 / 4e-12 AT4G01100 604 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10033947 [exp] 66 / 1e-11 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G322300 [exp] 551 / 0 AT5G14040 533 / 0.0 phosphate transporter 3;1 (.1) Potri.017G060800 [exp] 544 / 0 AT5G14040 542 / 0.0 phosphate transporter 3;1 (.1) Potri.012G105100 [exp] 513 / 0 AT5G14040 499 / 4e-178 phosphate transporter 3;1 (.1) Potri.015G104400 [exp] 497 / 3e-177 AT5G14040 489 / 2e-174 phosphate transporter 3;1 (.1) Potri.004G207200 [exp] 295 / 9e-99 AT2G17270 479 / 3e-172 phosphate transporter 3;3 (.1) Potri.005G098800 [exp] 278 / 1e-91 AT2G17270 447 / 2e-159 phosphate transporter 3;3 (.1) Potri.007G019000 [exp] 66 / 5e-12 AT5G66380 463 / 8e-166 folate transporter 1 (.1) Potri.001G094100 [exp] 65 / 2e-11 AT4G01100 563 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.014G095400 [exp] 65 / 2e-11 AT4G01100 599 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.003G137500 [exp] 64 / 3e-11 AT4G01100 618 / 0.0 adenine nucleotide transporter 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10012574 pacid=23143858 polypeptide=Lus10012574 locus=Lus10012574.g ID=Lus10012574.BGIv1.0 annot-version=v1.0 ATGGCGTTCTCCGATTCCTCCAAGAACTCGCTCATCCCGAGCTTCCTCTACTCTTCCACCATTTCCCCCAAGTCGGTCACCTTGTCTAAGCTCCTCCTCC ACTCTAACCCTACCGAATCGGTCCTCCCTCAGTCCCCGAGGAAGCCCTCCCTCGGCAGCCGAGGATTTGCTATCCCTGCTCCTAGCGAGCCGTTCGGCAA GATCGAGCTGTACTCTCCTGCTTTCTACGCTGCCTGTACCGCCGGAGGAATTCTCAGCTGTGGTCTCACTCACATGGCTGTCACTCCTCTTGACCTTGTC AAGTGCAATATGCAGATTGATCCTGTGAAGTACAAGGGCATCTCGTCTGGTTTTGGAGTGTTGTTTAAGGAGCAGGGGTTTAGAGGTTTCTTCAGGGGAT GGGTGCCTACCCTTCTTGGGTACAGTGCGCAGGGTGCCTGCAAGTTTGGCTTCTATGAATTCTTCAAGAAATACTACTCAGATATTGCTGGCCCCGAATA TGCTGCCAAGTATAAGACCTTGATCTACCTGGCTGGTTCTGCATCCGCTGAGGTGATTGCTGACATTGCCCTTTGCCCATTTGAGGCTGTGAAAGTTCGA GTGCAAACTCAGCCTGGGTTCGCTAGAGGTCTCTCTGATGGCCTTCCCAAGTTTGTCAGATCTGAAGGAGCTTTGGGATTGTACAAGGGTATTGTTCCAC TCTGGGGACGTCAAATTCCTTATACCATGATGAAGTTTGCTTCATTTGAAATGGTTGTGGAGATGATCTATAAGTATGCAGTACCCCGACCAAAGAGCGA ATGCAGCAAAGGACAGCAGCTTGGTATCAGTTTTGCCGGTGGTTTAATTGCTGGGGTTTTGTGTGCCATTGTCTCACATCCAGCTGATAATCTTGTATCT TTCCTCAACAATGCCAAGGGAGCAACTGTTGGTGATGCCGTGAAGAAGATTGGAATGGTGGGTCTCTTTACTCGTGGTCTCCCCCTACGTATTGTCATGA TTGGGACTCTTACTGGAGCCCAATGGGGTATCTATGATGCATTCAAAGTTTTCGTTGGGCTGCCAACCACTGGTGGGGCTCCTCCTCCAGCTGCTATTGC TGATTCTGGGGTAGCCAAGGCCTAA
AA sequence Show only first row Show all	>Lus10012574 pacid=23143858 polypeptide=Lus10012574 locus=Lus10012574.g ID=Lus10012574.BGIv1.0 annot-version=v1.0 MAFSDSSKNSLIPSFLYSSTISPKSVTLSKLLLHSNPTESVLPQSPRKPSLGSRGFAIPAPSEPFGKIELYSPAFYAACTAGGILSCGLTHMAVTPLDLV KCNMQIDPVKYKGISSGFGVLFKEQGFRGFFRGWVPTLLGYSAQGACKFGFYEFFKKYYSDIAGPEYAAKYKTLIYLAGSASAEVIADIALCPFEAVKVR VQTQPGFARGLSDGLPKFVRSEGALGLYKGIVPLWGRQIPYTMMKFASFEMVVEMIYKYAVPRPKSECSKGQQLGISFAGGLIAGVLCAIVSHPADNLVS FLNNAKGATVGDAVKKIGMVGLFTRGLPLRIVMIGTLTGAQWGIYDAFKVFVGLPTTGGAPPPAAIADSGVAKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14040		PHT3;1	phosphate transporter 3;1 (.1)		Lus10012574 [exp]	0	1
AT1G23290		RPL27A, RPL27AB	RIBOSOMAL PROTEIN L27A, Riboso...		Lus10004617 [exp]	7.1	0.9177
AT5G40660			ATP12 protein-related (.1)		Lus10009910 [exp]	8.2	0.9011
AT3G11400		ATEIF3G1, EIF3G...	eukaryotic translation initiat...		Lus10030482 [exp]	9.1	0.9135
AT4G28210		EMB1923	embryo defective 1923 (.1)		Lus10033723 [exp]	9.7	0.9000
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Lus10031764 [exp]	10.5	0.8918
AT5G08680			ATP synthase alpha/beta family...		Lus10035263 [exp]	13.5	0.9053
AT5G13490		AAC2	ADP/ATP carrier 2 (.1.2)		Lus10016417 [exp]	20.9	0.8304
AT1G61790			Oligosaccharyltransferase comp...		Lus10007647 [exp]	21.4	0.8927
AT3G09630			Ribosomal protein L4/L1 family...		Lus10019904 [exp]	21.5	0.8987
AT3G49910			Translation protein SH3-like f...		Lus10019283 [exp]	21.7	0.8934

Compare expression of checked genes

Lus10012574 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.