Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13980 1456 / 0 Glycosyl hydrolase family 38 protein (.1.2.3) AT3G26720 1300 / 0 Glycosyl hydrolase family 38 protein (.1.2) AT5G66150 1120 / 0 Glycosyl hydrolase family 38 protein (.1) AT5G14950 240 / 5e-65 GMII, ATGMII golgi alpha-mannosidase II (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041516 [exp] 1849 / 0 AT5G13980 1347 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Lus10035111 [exp] 1642 / 0 AT5G13980 1467 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Lus10036074 [exp] 1543 / 0 AT5G13980 1372 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Lus10012578 [exp] 1204 / 0 AT3G26720 1405 / 0.0 Glycosyl hydrolase family 38 protein (.1.2) Lus10025960 [exp] 517 / 2e-162 AT5G66150 1097 / 0.0 Glycosyl hydrolase family 38 protein (.1) Lus10014259 [exp] 474 / 1e-151 AT3G26720 959 / 0.0 Glycosyl hydrolase family 38 protein (.1.2) Lus10039457 [exp] 242 / 9e-66 AT5G14950 1573 / 0.0 golgi alpha-mannosidase II (.1) Lus10014507 [exp] 233 / 1e-62 AT5G14950 1552 / 0.0 golgi alpha-mannosidase II (.1) Lus10015337 [exp] 217 / 1e-57 AT5G14950 1506 / 0.0 golgi alpha-mannosidase II (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G143600 [exp] 1595 / 0 AT5G13980 1535 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Potri.012G106500 [exp] 1399 / 0 AT5G13980 1437 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Potri.002G238200 [exp] 1291 / 0 AT3G26720 1477 / 0.0 Glycosyl hydrolase family 38 protein (.1.2) Potri.007G056300 [exp] 1181 / 0 AT5G66150 1428 / 0.0 Glycosyl hydrolase family 38 protein (.1) Potri.001G350400 [exp] 265 / 2e-73 AT5G14950 1678 / 0.0 golgi alpha-mannosidase II (.1) Potri.017G073900 [exp] 248 / 1e-67 AT5G14950 1672 / 0.0 golgi alpha-mannosidase II (.1) Potri.008G117400 [exp] 64 / 1e-10 AT5G14950 470 / 1e-157 golgi alpha-mannosidase II (.1) Potri.012G106401 [exp] 77 / 7e-10 AT5G13980 71 / 1e-10 Glycosyl hydrolase family 38 protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0158 [flax] [poplar] GH_CE PF01074 [flax] [poplar] Glyco_hydro_38N Glycosyl hydrolases family 38 N-terminal domain CL0103 [flax] [poplar] Gal_mutarotase PF07748 [flax] [poplar] Glyco_hydro_38C Glycosyl hydrolases family 38 C-terminal domain CL0599 [flax] [poplar] GH57_38_middle PF09261 [flax] [poplar] Alpha-mann_mid Alpha mannosidase middle domain
Representative CDS sequence Show only first row Show all	>Lus10012577 pacid=23143865 polypeptide=Lus10012577 locus=Lus10012577.g ID=Lus10012577.BGIv1.0 annot-version=v1.0 ATGGACAAGATTGAGCTTCCATGGCGGCTGTTCACTCCTGCTGCTATTGCCTACACGATTTTGCTTTCCATTGCAATTCAATGCGGGGAATCCAAGTATA TAGCCTACAACACTTCCCAGGGCATAGTCCCCGGTAAGCTCAATGTTCACTTGGTTCCTCATACCCATGATGATGTTGGTTGGCTCAAGACTGTTGACCA GTACTACGTTGGCTCCAACAATTCAATCCAGGGTGCCTGCGTGCAGAACGTTCTGGATTCCCTCATTCCGGCATTGCTAGCTGACAAGAATCGCAAGTTC ATCTATGTCGAAATGGCATTTTTCGAACGATGGTGGAATGAACAAAGTGAACCAATGAAGCACATTGTCAAGCAGCTTGTGGCCTCTGGTCAGCTAGAAT TCATAAATGGGGGTATGTGCATGCACGATGAGGCAGTGACCCATTACATTGACATGGTGGACCAAACAACCCTAGGTCATCGGTTCCTCAAAAGGGAATT TGGTGTGACGCCAAGAATTGGTTGGCAGATTGACCCTTTTGGACATTCTGCTGTCCAGGCTTATTTGTTGGGAGCTGAAGTTGGTTTCGACGCTCTTTTC TTCGGCCGGATAGATTACCAGGACAGAGAAAAGCGTAAGGGTGAGAAGAGTCTGGAAACGGTCTGGCAGGGTTCCAAAAGTCTTCCTGCATTGAAGATTT TTGCTGGTGCATTCCCAACGAACTATGAGCCTCCACCTGGTGATTTCTACTTTGAAGTCAATGATGCCTCTCCTGTTGTTCAAGATGACATCAATTTGTT TGATTACAATGTTCCGGAACGAGTAAATGACTTTGTTGCTGCGGCTATATGGCAGGCAAATATTACTCGAACAAATCATGTCATGTTTACGATGGGAACA GATTTCAAGTATCAGTATGCAACCTCTTGGTTCCGCCAGATGGACAAGCTGATTCACTATGTAAACATGGATGGACGAGTGAATGCTCTGTACTCTACCC CATCCATATATACTGATGCCAAGCATTCTGCAAAAGTGACCTGGCCGCTAAAGACTGATGACTTTTTCCCTTATGCAGATCGTGCAAATGGTTTCTGGAC AGGATACTTCTCAAGTCGACCAGCCTTGAAACGTTATGTTAGAGTGATGAGTGGCTATTACTTGGCTGCAAGACAACTGGAATTTCTGAAAGGACGAAGT AACGTAGGGCCAAATACCAACTCATTGGCAGATGCAATGGCAATCGCTCAGCATCATGATGCCGTTACTGGAACAGAAAAGCAACATGTAGCTAATGATT ATGCCAAACGACTTGCAATTGGCTATGCAGAGGCTGAAAAGGTCGTTGCAACTTCACTCAGTTGCTTGTCCGAAGTCCATTCTCATGCAGGATGCCAGAG TACAACAACAAAATTTGAACAGGCAAGTCTTGAATGCAGTGTTATGGTGCTATACCTACCAACTTGCATTATTGTTCTTCATCAAGGGATTCATCGGATG TGTGCATATGTAGTTAATCTATTGTGCCCCCTTCTGAACATAAGCTACTGTCCCGCATCTGAGAATAACCATCTTGGAAAGAAGTTGATTGTTTTGGTCT ATAATTCTCTTGGTTGGCCAAGAGATGAAGTGATCCAACTTCCCGTTATTAGTGATGATGTTGTCGTGCATGATCCGGAGGGGAAAGAAGTTGAAGCTCA ACTTGTTCCTCTAATGGAAGCCTATCTAAGTTTGAGGAACTTCCATGTTAAGGCTTACCTGGGTACAACACCGGCAGGAACTCCGAAGTATTGGCTTGCC TTCAGAGTCTCCGTCCCTCCTTTTGGTTTCAGCTCCTATACAATCTCTAGTGCCAAAATTGCAGGTGTTCACTCAACCAAACCACCTGTATACAAATCGA AAAGAAGCCGGAAATCTATTGCTGAACTGGGTCAAGGAGATCTTAAGCTCACCCGTTCATCTTTACAAGGGAAGCCATCTGGTTACTCGAACAGCAGGAG CTCAGTGAAGGAGCAAGTTCAGCAGTCTTTTAGTTACTACGGTGGATATAATGGAACCAACGACGAAAGTCCTCAGAATGGCGGGGCATACATCTTCCGA CCAAATGGGACGTACCCCATTCAACCTGCAAAGCAGGTTCCTTTGACGGTTATTAGCGGGCCTATTGTAGAAGAAATACATGAACAGATCAACCCGTGGA TATATCAGGTTACAAGATTATACAAAGGAAAAGAGCATGTTGAAGTTGAGTTTATAGTTGGTCCCATACCCACTGATGACGGCATTGGGAAAGAAGTTGT AACTCAAATCACAACTTCAATGGAAACCAATAAAACATTCTATACAGACTCTAATGGACGTGACTTTATTACAGATTCTAATGGACGTGACTTTATCAAA AGGATTCGTGATTATAGATCAGACTGGGACCTGGAAGTGACTGAACCAGTTGCTGGAAATTATTACCCGATTAATCTGGGAATTTATGCCAAAGATGACA AGAAAGAATTTTCTGTTCTTGTGGATCGGGCTCTTGCAGGAGGTAGCGTAAAGGATGGACAAATAGAGCTACTACTCCATAGGAGACTCCTACTTGATGA TTCCAGAGGTGTTGATGAGGCTCTAAACGAAACAGTTTGCATTCAAGACAAATGCTCGGGATTAACGATCCAAGGAAAATACTACTACAGAATTGACCCA ATAGGAGAGGGTGCTAAGTGGCGTCGATCTTTCGGACAGCAGATATATTCACCTTTATTGCTAGCCTTTGCTGAAGAGGATGGAGATAAATGGACGAACT CTCACGTAACAACATTTTCGGGATTGGCTCCCTCCTATAGTTTACCGGAAAATGTTGCCGTCATAACCCTCCAGGAACTAGATGACGGGAAGGTGCTTCT TCGTTTAGCACATCTGTACGAGGTTGGAGAGGACAAGGATCTGTCCGTGAAGGCAACTGTGGAACTAACGAAACTGTTCCCTGGAAAGAAGATAGGGCAG GTGGTGGAAATGAGCTTGTCTGCGAACCAAGAGAAGGCAGAAATGGAGAAGAAAAAGCTTGTCTGGAAACCTGAATCATCATCATCATCTGAAGCAAGGC GACGGCAGATCGATTACGCAAAGCTGGAGGTTGATCTACTTCCAATGGAAATCCGCACCTTTCTTGTTGACATTGTTGCCGACACCTTTCAGGCGAAAGT TATGTGA
AA sequence Show only first row Show all	>Lus10012577 pacid=23143865 polypeptide=Lus10012577 locus=Lus10012577.g ID=Lus10012577.BGIv1.0 annot-version=v1.0 MDKIELPWRLFTPAAIAYTILLSIAIQCGESKYIAYNTSQGIVPGKLNVHLVPHTHDDVGWLKTVDQYYVGSNNSIQGACVQNVLDSLIPALLADKNRKF IYVEMAFFERWWNEQSEPMKHIVKQLVASGQLEFINGGMCMHDEAVTHYIDMVDQTTLGHRFLKREFGVTPRIGWQIDPFGHSAVQAYLLGAEVGFDALF FGRIDYQDREKRKGEKSLETVWQGSKSLPALKIFAGAFPTNYEPPPGDFYFEVNDASPVVQDDINLFDYNVPERVNDFVAAAIWQANITRTNHVMFTMGT DFKYQYATSWFRQMDKLIHYVNMDGRVNALYSTPSIYTDAKHSAKVTWPLKTDDFFPYADRANGFWTGYFSSRPALKRYVRVMSGYYLAARQLEFLKGRS NVGPNTNSLADAMAIAQHHDAVTGTEKQHVANDYAKRLAIGYAEAEKVVATSLSCLSEVHSHAGCQSTTTKFEQASLECSVMVLYLPTCIIVLHQGIHRM CAYVVNLLCPLLNISYCPASENNHLGKKLIVLVYNSLGWPRDEVIQLPVISDDVVVHDPEGKEVEAQLVPLMEAYLSLRNFHVKAYLGTTPAGTPKYWLA FRVSVPPFGFSSYTISSAKIAGVHSTKPPVYKSKRSRKSIAELGQGDLKLTRSSLQGKPSGYSNSRSSVKEQVQQSFSYYGGYNGTNDESPQNGGAYIFR PNGTYPIQPAKQVPLTVISGPIVEEIHEQINPWIYQVTRLYKGKEHVEVEFIVGPIPTDDGIGKEVVTQITTSMETNKTFYTDSNGRDFITDSNGRDFIK RIRDYRSDWDLEVTEPVAGNYYPINLGIYAKDDKKEFSVLVDRALAGGSVKDGQIELLLHRRLLLDDSRGVDEALNETVCIQDKCSGLTIQGKYYYRIDP IGEGAKWRRSFGQQIYSPLLLAFAEEDGDKWTNSHVTTFSGLAPSYSLPENVAVITLQELDDGKVLLRLAHLYEVGEDKDLSVKATVELTKLFPGKKIGQ VVEMSLSANQEKAEMEKKKLVWKPESSSSSEARRRQIDYAKLEVDLLPMEIRTFLVDIVADTFQAKVM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13980			Glycosyl hydrolase family 38 p...		Lus10012577 [exp]	0	1
AT4G10730			Protein kinase superfamily pro...		Lus10017326 [exp]	6.0	0.8158
AT1G80920		AtToc12, AtJ8, ...	translocon at the outer envelo...		Lus10014352 [exp]	6.2	0.7834
AT1G60140		ATTPS10	TREHALOSE PHOSPHATE SYNTHASE 1...		Lus10030635 [exp]	14.2	0.7920
AT1G19050		ARR7	response regulator 7 (.1)		Lus10036642 [exp]	16.5	0.6787
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Lus10019192 [exp]	29.2	0.7006
AT1G72550			tRNA synthetase beta subunit f...		Lus10009382 [exp]	30.0	0.7150
AT1G77280			Protein kinase protein with ad...		Lus10028661 [exp]	32.2	0.7055
AT1G60140		ATTPS10	TREHALOSE PHOSPHATE SYNTHASE 1...		Lus10030853 [exp]	33.9	0.7722
AT5G54510		DFL1, GH3.6	DWARF IN LIGHT 1, Auxin-respon...		Lus10003598 [exp]	36.9	0.7228
AT1G28260			Telomerase activating protein ...		Lus10015430 [exp]	37.4	0.7584

Compare expression of checked genes

Lus10012577 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.