Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26720 1385 / 0 Glycosyl hydrolase family 38 protein (.1.2) AT5G13980 1280 / 0 Glycosyl hydrolase family 38 protein (.1.2.3) AT5G66150 1100 / 0 Glycosyl hydrolase family 38 protein (.1) AT5G14950 284 / 3e-80 GMII, ATGMII golgi alpha-mannosidase II (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035111 [exp] 1209 / 0 AT5G13980 1467 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Lus10012577 [exp] 1202 / 0 AT5G13980 1483 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Lus10036074 [exp] 1117 / 0 AT5G13980 1372 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Lus10041516 [exp] 1115 / 0 AT5G13980 1347 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Lus10025960 [exp] 944 / 0 AT5G66150 1097 / 0.0 Glycosyl hydrolase family 38 protein (.1) Lus10014259 [exp] 888 / 0 AT3G26720 959 / 0.0 Glycosyl hydrolase family 38 protein (.1.2) Lus10039457 [exp] 280 / 5e-79 AT5G14950 1573 / 0.0 golgi alpha-mannosidase II (.1) Lus10015337 [exp] 256 / 1e-70 AT5G14950 1506 / 0.0 golgi alpha-mannosidase II (.1) Lus10014507 [exp] 256 / 1e-70 AT5G14950 1552 / 0.0 golgi alpha-mannosidase II (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G238200 [exp] 1533 / 0 AT3G26720 1477 / 0.0 Glycosyl hydrolase family 38 protein (.1.2) Potri.012G106500 [exp] 1357 / 0 AT5G13980 1437 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Potri.014G143600 [exp] 1340 / 0 AT5G13980 1535 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Potri.007G056300 [exp] 1137 / 0 AT5G66150 1428 / 0.0 Glycosyl hydrolase family 38 protein (.1) Potri.001G350400 [exp] 296 / 2e-84 AT5G14950 1678 / 0.0 golgi alpha-mannosidase II (.1) Potri.017G073900 [exp] 276 / 1e-77 AT5G14950 1672 / 0.0 golgi alpha-mannosidase II (.1) Potri.008G117400 [exp] 67 / 2e-11 AT5G14950 470 / 1e-157 golgi alpha-mannosidase II (.1) Potri.012G106401 [exp] 67 / 1e-06 AT5G13980 71 / 1e-10 Glycosyl hydrolase family 38 protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0158 [flax] [poplar] GH_CE PF01074 [flax] [poplar] Glyco_hydro_38N Glycosyl hydrolases family 38 N-terminal domain CL0103 [flax] [poplar] Gal_mutarotase PF07748 [flax] [poplar] Glyco_hydro_38C Glycosyl hydrolases family 38 C-terminal domain CL0599 [flax] [poplar] GH57_38_middle PF09261 [flax] [poplar] Alpha-mann_mid Alpha mannosidase middle domain
Representative CDS sequence Show only first row Show all	>Lus10012578 pacid=23143870 polypeptide=Lus10012578 locus=Lus10012578.g ID=Lus10012578.BGIv1.0 annot-version=v1.0 ATGGAGTTTTCCGTCTTCTGCTTCCTCCTCCTCTTCACGCTCTGTTCGTCGTCGCTCTCCGTCCACTCCACTTTCATCCCTTACAACACTTCCTCCTCCG TCGTCCCCGGCAAAATCAACGTCCACTTGGTCCCTCACTCCCACGACGATGTTGGCTGGCTCAAGACTGTTGATCAGTACTACTTCGGCGGTAACAATTC CATCCGGGTTGCATGTGTCCAGAATGTTTTGGATTCTGTGATGTCCTCTTTGTTTGAGGATAAGAATCGCAAGTTCATCTATGTCGAGATGGCATTCTTC CAGAGATGGTGGCGGCAGCAAAGCAATGCAATGAAGGAGAAGGTCAAAGGGCTTGTCAACTCTGGTCAACTAGAATTCATAAATGGAGGCATGTGTATGC ACGATGAGGCTACCCCACATTACATAGACTTGATTGATCAGACGACTCTGGGACATAAATTTATCAAGGATGAATTCGGCCAGCTTCCTAGAGTTGGCTG GCAGATTGACCCATTTGGACATTCTGCTGTTCAAGCTTATTTGCTTGGTGCTGAGTTAGGATTCGACTCTCTCTTCTTTGCTAGAATTGATTACCAAGAC AGAGCTAAGCGATTAAAGGATAAGACTCTTGAGGTTGTATGGCGGGGTTCCCAGTCTCTTGGCTCAACTTCACAGATATTCACCGGTATTTTCCCTAGAC ATTATGACCCTCCTGATGGATTCACATTTGAAGTTAATGACGTATCACCCCCTATTCAGGATGATGTGCTCCTATTTGACTATAACGTCCAAGAGCGGGT CAACGACTTTGTGGCTGCTGCATTGGCTCAGGCCAATGTAACACGAGCGAATCATATAATGTGGCTGATGGGAACTGATTTCCGTTATCAGTATGCGAAT TCATGGTATCGACAGATGGACAAGTTCATCCACTATGTTAACCAGGATGGTCGTGTAAATGTTCTCTATTCAACCCCATCCATGTATACTGACGCAAAAC ATGCATCAAATGAAAAATGGCCTCTCAAAACTGGAGATTTCTTTCCGTATGCAGATCATCCAAATGCCTACTGGACCGGTTATTTTACAAGTAGGCCTGC ATTCAAAGGCTATGTCCGAACGATGAGTGGTTACTACCTTGCTGCACGGCAACTGGAGTTCTTTGGAGGCATGCGTGGTATGCCTTCCAAAACTGATGGA CTTGCAGATTCCTTGGCTATTGCACAGCATCATGACGCTGTTAGTGGTACACAAAGGCAGCATGTCGTTGCAGATTATGCTTTGCGGATCTCAATTGGCT ATAAGGAGTGTCCTTTACTAAACATAAGTTATTGTCCTCCATCAGAAGCTGTTTTATCTGAGGGGCAAAGCTTGGTTGTTGTGGCTTATAATCCTCTAGG ATGGAAAAGAGAGGAGCTCATACGCATTCCGGTTTCTTCTGATAAGCTAAAAGTTCATGACTCTAATGGGGTAGAAATAGAATCTCAGCTGCTCCCACTC TTGAATGCAACTTTGCAAGTAAGGACTACATATGCCAAAGCCTATATGGGTCACTTTCCAAGTGAAACACCAAATTACTGGCTTGCCTTTTCAGCATCTC TACCACCCCTGGGTTTCAATACTTATATTGTCTCAGCAGCTAATCAGACAGGCCCTAGTTCAACCATCTCACGAGTGCACAATTCTGAAAACAGTACTAA TAGAACTGTTGAAGTTGGCCCTGGGAATTTAAAGCTCCGTTTCTCTGTAGATGAAGGGAGGCTTACTCATGTTGCCAATAGCAGAAGCCTGGTAGCTACC ACTGTGGGACAATCATATGGTTATTACACAGGAAATGATGGAACTGCTAAAGATCCACAGGCTTCCGGAGCATACGTCTTTCGACCAAATGAGACATTCA CAATAAAACAAGTGGATAAGGTTCCTTTGACTATTATGAAAGGCCCACTACTGGATGAAGTGCATCAGCAGCTCAACCCCTGGATTTCTCAGATTGGGCC TATACCCATGGACGACGGAACTGGGAAAGAAATAACTACTCAAATCATAACCTCCATGAAGACTAACAAGACATTTTATACAGACTCTAACGGACGTGAC TTCATCAAAAGGATTCGAGATCAGCGGACAGATTGGGACCTTGAAGTCAACCAGCCTGTTGCTGGAAATTATTATCCTATTAACCTTGGAATATATGTAC AAGATGATAGCACAGAGCTGTCAGTATTGGTGGATCGGTCAGTGGGTGGTTCTAGTCTCGTTGATGGTCAGATAGAACTAATGCTACACAGGAGGATGAT TCATGATGATGTTAGAGGTGTGGGAGAAGTGTTAAATGAGACAGTTTGTGTCCTCAACGAATGTGAAGGTTTAACTGGTCTGGAAACTGACTTCGTTAGC CTATTGCCGCAGGTTGTAGGTAAATTTTTCTTCAAAGTTGACAACTTAGGAGAAGGTGCTAAGTGGCGCCGCACTCTTGGCCAAGAACTATATTCTCCGG TCCTTGTAGCCTTCGCAAAGCAGGAAGGGAAAGATAACTGGATGGACTCCCATATACAATCATTTTCAGGAATCGATCCATCCTATTCTTTACCTAACAA TGTTGCTATAATAACCCTACAGGAACTTGAAAACGGGAAAGTTCTCGTCCGTTTGGCGCACTTATATGAGGTGGGAGAGGACAAGGACTACTCTGGAATG GCGAGGGTGGAACTGAAAAAGCTTTTTCCAAATAAGAAGATTATCAAAGCAACGGAGCAGAGTTTGTCAGCGAATCAAGAGCGAAGTGAGATGGAGAAGA GGAGGCTAGTCTGGAAAGTAGAAAGTTCTGCAGAGGAAGAGTCTGATGTTGTGGTTAGGGGAGGAAAGGTTGATCCTGTTGATCTAGTGGTGGAACTTGC TCCCATGGAAATTCGAACATTCCACATAGACTTGGAGAAGTCCTTGCATTCCCAAATCTCCGATTCCTGA
AA sequence Show only first row Show all	>Lus10012578 pacid=23143870 polypeptide=Lus10012578 locus=Lus10012578.g ID=Lus10012578.BGIv1.0 annot-version=v1.0 MEFSVFCFLLLFTLCSSSLSVHSTFIPYNTSSSVVPGKINVHLVPHSHDDVGWLKTVDQYYFGGNNSIRVACVQNVLDSVMSSLFEDKNRKFIYVEMAFF QRWWRQQSNAMKEKVKGLVNSGQLEFINGGMCMHDEATPHYIDLIDQTTLGHKFIKDEFGQLPRVGWQIDPFGHSAVQAYLLGAELGFDSLFFARIDYQD RAKRLKDKTLEVVWRGSQSLGSTSQIFTGIFPRHYDPPDGFTFEVNDVSPPIQDDVLLFDYNVQERVNDFVAAALAQANVTRANHIMWLMGTDFRYQYAN SWYRQMDKFIHYVNQDGRVNVLYSTPSMYTDAKHASNEKWPLKTGDFFPYADHPNAYWTGYFTSRPAFKGYVRTMSGYYLAARQLEFFGGMRGMPSKTDG LADSLAIAQHHDAVSGTQRQHVVADYALRISIGYKECPLLNISYCPPSEAVLSEGQSLVVVAYNPLGWKREELIRIPVSSDKLKVHDSNGVEIESQLLPL LNATLQVRTTYAKAYMGHFPSETPNYWLAFSASLPPLGFNTYIVSAANQTGPSSTISRVHNSENSTNRTVEVGPGNLKLRFSVDEGRLTHVANSRSLVAT TVGQSYGYYTGNDGTAKDPQASGAYVFRPNETFTIKQVDKVPLTIMKGPLLDEVHQQLNPWISQIGPIPMDDGTGKEITTQIITSMKTNKTFYTDSNGRD FIKRIRDQRTDWDLEVNQPVAGNYYPINLGIYVQDDSTELSVLVDRSVGGSSLVDGQIELMLHRRMIHDDVRGVGEVLNETVCVLNECEGLTGLETDFVS LLPQVVGKFFFKVDNLGEGAKWRRTLGQELYSPVLVAFAKQEGKDNWMDSHIQSFSGIDPSYSLPNNVAIITLQELENGKVLVRLAHLYEVGEDKDYSGM ARVELKKLFPNKKIIKATEQSLSANQERSEMEKRRLVWKVESSAEEESDVVVRGGKVDPVDLVVELAPMEIRTFHIDLEKSLHSQISDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26720			Glycosyl hydrolase family 38 p...		Lus10012578 [exp]	0	1
AT1G74740		CDPK1A, CPK30, ...	CALCIUM-DEPENDENT PROTEIN KINA...		Lus10042185 [exp]	1.7	0.9042
AT1G63430			Leucine-rich repeat protein ki...		Lus10001489 [exp]	4.9	0.8750
AT3G27960			Tetratricopeptide repeat (TPR)...		Lus10008786 [exp]	5.3	0.9003
AT4G36190			Serine carboxypeptidase S28 fa...		Lus10041817 [exp]	8.0	0.8577
AT1G62990	HD	IXR11, KNAT7	KNOTTED-like homeobox of Arabi...		Lus10001195 [exp]	8.2	0.8577
AT5G65500			U-box domain-containing protei...		Lus10035947 [exp]	8.9	0.8637
AT4G22758			unknown protein		Lus10000386 [exp]	11.2	0.8780
AT1G17950	MYB	AtMYB52, BW52, ...	myb domain protein 52 (.1)		Lus10031900 [exp]	12.0	0.8864
AT5G25510			Protein phosphatase 2A regulat...		Lus10010426 [exp]	13.6	0.8184
AT4G28500	NAC	ANAC073, SND2, ...	SECONDARY WALL-ASSOCIATED NAC ...		Lus10015392 [exp]	14.2	0.8970

Compare expression of checked genes

Lus10012578 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.