Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38130 286 / 9e-100 ATMAK3 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) AT5G11340 60 / 1e-11 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) AT2G06025 40 / 0.0006 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041514 [exp] 384 / 1e-138 AT2G38130 287 / 3e-100 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Lus10008088 [exp] 54 / 8e-09 AT5G11340 249 / 2e-85 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10013120 [exp] 49 / 2e-07 AT5G11340 256 / 8e-89 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10037996 [exp] 41 / 0.0003 AT2G39000 335 / 2e-115 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Lus10042595 [exp] 39 / 0.0007 AT1G03150 348 / 6e-125 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10009229 [exp] 39 / 0.0008 AT2G39000 320 / 5e-112 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G432400 [exp] 315 / 2e-111 AT2G38130 296 / 4e-104 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Potri.001G435300 [exp] 315 / 2e-111 AT2G38130 299 / 6e-105 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Potri.001G429200 [exp] 315 / 3e-111 AT2G38130 299 / 6e-105 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Potri.011G139300 [exp] 308 / 4e-108 AT2G38130 294 / 1e-102 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Potri.001G425800 [exp] 222 / 5e-75 AT2G38130 207 / 2e-69 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Potri.001G433800 [exp] 120 / 3e-35 AT2G38130 117 / 3e-34 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Potri.006G248900 [exp] 59 / 6e-11 AT5G11340 280 / 3e-98 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.018G032400 [exp] 56 / 9e-10 AT5G11340 270 / 4e-94 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.006G142100 [exp] 40 / 0.0006 AT2G06025 347 / 1e-120 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.008G039300 [exp] 40 / 0.0008 AT2G39000 387 / 1e-135 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0257 [flax] [poplar] Acetyltrans PF00583 [flax] [poplar] Acetyltransf_1 Acetyltransferase (GNAT) family
Representative CDS sequence Show only first row Show all	>Lus10012579 pacid=23143820 polypeptide=Lus10012579 locus=Lus10012579.g ID=Lus10012579.BGIv1.0 annot-version=v1.0 ATGGACGGTGAGCGAGGCGTAGAGGAAGGGGACACTGCAAAAGAAGAGAAAGCTACATTCGATGAATCGGAGATAGAGTACGTGAGCTACGGCGGCGAGC ATCACCTACCGCTAATAATGGGTCTGGTTGATCAGGAGCTGAGTGAACCCTACTCCATCTTCACTTACCGCTACTTCGTATACCTATGGCCCCAGCTTTC ATTTCTGACGTTCCATAGAGGGAGATGCGTAGGGACGGTGGTATGCAAAATGGGGGAGCATCGTAATACTACTTTCAGAGGCTACATAGCTATGTTGGTT GTCATCAAGCCTTATCGTGGCAAAGGCATTGCTACTGAACTTGTTACCAGATCAATCAGAGCGATGATGGACTCCGGATGTGAAGAGGTAACACTGGAAG CAGAAGTAACAAATAAAGGTGCTCTTGCACTATATGGCAGACTGGGGTTCATTAGGGCAAAACGACTGTTTCATTACTACTTGAATGGAGTAGATGCTTT TCGTCTGAAACTGCGTTTCCCTCAACTTGAGATGAACCCATCTGCCATTAATTTTCTGGACGAGACACAGAGATGA
AA sequence Show only first row Show all	>Lus10012579 pacid=23143820 polypeptide=Lus10012579 locus=Lus10012579.g ID=Lus10012579.BGIv1.0 annot-version=v1.0 MDGERGVEEGDTAKEEKATFDESEIEYVSYGGEHHLPLIMGLVDQELSEPYSIFTYRYFVYLWPQLSFLTFHRGRCVGTVVCKMGEHRNTTFRGYIAMLV VIKPYRGKGIATELVTRSIRAMMDSGCEEVTLEAEVTNKGALALYGRLGFIRAKRLFHYYLNGVDAFRLKLRFPQLEMNPSAINFLDETQR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38130		ATMAK3	Acyl-CoA N-acyltransferases (N...		Lus10012579 [exp]	0	1
AT4G16450			unknown protein		Lus10038803 [exp]	4.5	0.7704
AT4G25270		OTP70	organelle transcript processin...		Lus10031134 [exp]	11.7	0.7442
AT1G07740			Tetratricopeptide repeat (TPR)...		Lus10005876 [exp]	13.4	0.7212
AT5G13430			Ubiquinol-cytochrome C reducta...		Lus10041513 [exp]	13.8	0.7396
					Lus10015445 [exp]	14.0	0.7326
AT5G24165			unknown protein		Lus10014921 [exp]	16.2	0.7200
AT3G59380		FTA, PLP, ATFTA...	PLURIPETALA, farnesyltransfera...		Lus10015954 [exp]	16.5	0.7407
AT1G48200			unknown protein		Lus10042704 [exp]	17.3	0.6599
AT5G62030			diphthamide synthesis DPH2 fam...		Lus10039108 [exp]	21.9	0.7179
AT3G62790			NADH-ubiquinone oxidoreductase...		Lus10035034 [exp]	24.0	0.7301

Compare expression of checked genes

Lus10012579 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.