Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13430 363 / 1e-127 Ubiquinol-cytochrome C reductase iron-sulfur subunit (.1) AT5G13440 362 / 3e-127 Ubiquinol-cytochrome C reductase iron-sulfur subunit (.1) AT4G03280 56 / 6e-09 PGR1, PETC PROTON GRADIENT REGULATION 1, photosynthetic electron transfer C (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041513 [exp] 516 / 0 AT5G13430 376 / 9e-133 Ubiquinol-cytochrome C reductase iron-sulfur subunit (.1) Lus10035118 [exp] 452 / 2e-162 AT5G13430 379 / 8e-134 Ubiquinol-cytochrome C reductase iron-sulfur subunit (.1) Lus10031982 [exp] 451 / 3e-162 AT5G13430 379 / 4e-134 Ubiquinol-cytochrome C reductase iron-sulfur subunit (.1) Lus10041870 [exp] 444 / 1e-159 AT5G13430 378 / 1e-133 Ubiquinol-cytochrome C reductase iron-sulfur subunit (.1) Lus10028416 [exp] 275 / 1e-94 AT5G13440 265 / 3e-91 Ubiquinol-cytochrome C reductase iron-sulfur subunit (.1) Lus10039739 [exp] 56 / 4e-09 AT4G03280 306 / 1e-106 PROTON GRADIENT REGULATION 1, photosynthetic electron transfer C (.1.2) Lus10018521 [exp] 56 / 6e-09 AT4G03280 306 / 1e-106 PROTON GRADIENT REGULATION 1, photosynthetic electron transfer C (.1.2) Lus10028417 [exp] 0 / 1 AT5G13430 57 / 4e-16 Ubiquinol-cytochrome C reductase iron-sulfur subunit (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G162200 [exp] 381 / 2e-134 AT5G13430 417 / 8e-149 Ubiquinol-cytochrome C reductase iron-sulfur subunit (.1) Potri.001G067900 [exp] 378 / 2e-133 AT5G13430 413 / 4e-147 Ubiquinol-cytochrome C reductase iron-sulfur subunit (.1) Potri.019G118500 [exp] 52 / 5e-08 AT4G03280 318 / 4e-111 PROTON GRADIENT REGULATION 1, photosynthetic electron transfer C (.1.2) Potri.013G148900 [exp] 52 / 6e-08 AT4G03280 311 / 3e-108 PROTON GRADIENT REGULATION 1, photosynthetic electron transfer C (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0300 [flax] [poplar] TAT PF02921 [flax] [poplar] UCR_TM Ubiquinol cytochrome reductase transmembrane region CL0516 [flax] [poplar] ISP-domain PF00355 [flax] [poplar] Rieske Rieske [2Fe-2S] domain
Representative CDS sequence Show only first row Show all	>Lus10012580 pacid=23143886 polypeptide=Lus10012580 locus=Lus10012580.g ID=Lus10012580.BGIv1.0 annot-version=v1.0 ATGTTGAGGGTTGGATTGCGCCGCCTCTCATCTTTGTCTTCACCGTCGTTGAGAGCCAACCAGGCCGCCTCCGTAGTGGGCTCGCAGAACCCGCTTCGTG GTGCTTTCGATGATTCGTCTGATGAGCTGAAGCCCGACCGCTTAGCCAGCTACTACTTTGCTTTCCATGTTCCTCGTCGAGGTTTTGCTTCTGGATCGCT TGCCCCAAAAGAAGGGGATGGTGTAGAGCCTGGCACCTTAGCAACTACGCATGCTCTTAAGAATCCTTCACCTAAGATAGTTTACGATGAATACAACCAT GAGCGGATGCCACCTGGCGATCCTAGCAAGCGGGCATTCGCCTATTTTGTGCTCTCTGGTGGAAGATTTGTATATGCATCCTTGATCCGTCTCCTCATCC TCAAATTTGTGCTCAGTATGTCTGCCACTAAGGATGTGCTTGCATTGGCCTCACTCGAGGTTGATATCTCCAGCATCGAACCGGGCACTACGGTGACGGT AAAGTGGCGTGGGAAACCAGTTTTCATCAGGCGAAGAACTGAGGATGACATCAAACTAGCAAATAGTGTTGAGTTGACATCTCTTCGTGATCCACAACCA GATGGGGACAGAGTGAAGGACCCGGAGTGGCTGATTGTGATTGGGGTGTGCACACATCTGGGTTGCATCCCTTTGCCAAATGCTGGTGATTTCGGTGGAT GGTTTTGCCCTTGCCATGGATCTCATTACGACATCTCTGGAAGGATTCGGAAGGGGCCTGCACCGTACAACTTGGAGGTGCCAACGTACACCTTTTTGGA GGACAATAAGTTAATGATCGGTTGA
AA sequence Show only first row Show all	>Lus10012580 pacid=23143886 polypeptide=Lus10012580 locus=Lus10012580.g ID=Lus10012580.BGIv1.0 annot-version=v1.0 MLRVGLRRLSSLSSPSLRANQAASVVGSQNPLRGAFDDSSDELKPDRLASYYFAFHVPRRGFASGSLAPKEGDGVEPGTLATTHALKNPSPKIVYDEYNH ERMPPGDPSKRAFAYFVLSGGRFVYASLIRLLILKFVLSMSATKDVLALASLEVDISSIEPGTTVTVKWRGKPVFIRRRTEDDIKLANSVELTSLRDPQP DGDRVKDPEWLIVIGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYTFLEDNKLMIG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13430			Ubiquinol-cytochrome C reducta...		Lus10012580 [exp]	0	1
AT1G77180		SKIP	chromatin protein family (.1.2...		Lus10027158 [exp]	2.6	0.8747
AT1G78310			VQ motif-containing protein (....		Lus10010346 [exp]	3.0	0.8464
AT1G22310		ATMBD8, MBD8	methyl-CPG-binding domain 8 (....		Lus10033445 [exp]	3.5	0.8222
AT1G75950		UIP1, SKP1A, AT...	UFO INTERACTING PROTEIN 1, ARA...		Lus10019794 [exp]	3.5	0.8455
AT1G71180			6-phosphogluconate dehydrogena...		Lus10001349 [exp]	3.7	0.8556
AT5G64550			loricrin-related (.1)		Lus10011515 [exp]	5.2	0.8253
AT5G42190		SKP1B, ASK2	Arabidopsis SKP-like 2, E3 ubi...		Lus10017281 [exp]	6.3	0.8382
AT2G18040		PIN1AT	"peptidylprolyl cis/trans isom...		Lus10025967 [exp]	7.4	0.8228
AT1G16350			Aldolase-type TIM barrel famil...		Lus10000276 [exp]	8.2	0.7984
AT5G13890			Family of unknown function (DU...		Lus10041505 [exp]	11.2	0.8346

Compare expression of checked genes

Lus10012580 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.