Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19340 739 / 0 Protein of unknown function (DUF3754) (.1) AT5G13940 548 / 0 aminopeptidases (.1) AT2G46915 81 / 7e-16 Protein of unknown function (DUF3754) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041512 [exp] 872 / 0 AT3G19340 756 / 0.0 Protein of unknown function (DUF3754) (.1) Lus10031975 [exp] 828 / 0 AT3G19340 754 / 0.0 Protein of unknown function (DUF3754) (.1) Lus10035127 [exp] 814 / 0 AT3G19340 749 / 0.0 Protein of unknown function (DUF3754) (.1) Lus10012584 [exp] 552 / 0 AT3G19340 589 / 0.0 Protein of unknown function (DUF3754) (.1) Lus10041510 [exp] 537 / 0 AT3G19340 579 / 0.0 Protein of unknown function (DUF3754) (.1) Lus10004371 [exp] 147 / 8e-38 AT5G47240 410 / 2e-139 nudix hydrolase homolog 8 (.1) Lus10010092 [exp] 76 / 4e-14 AT2G46915 704 / 0.0 Protein of unknown function (DUF3754) (.1) Lus10007214 [exp] 70 / 2e-12 AT2G46915 699 / 0.0 Protein of unknown function (DUF3754) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G237700 [exp] 783 / 0 AT3G19340 813 / 0.0 Protein of unknown function (DUF3754) (.1) Potri.014G144300 [exp] 760 / 0 AT3G19340 771 / 0.0 Protein of unknown function (DUF3754) (.1) Potri.014G144500 [exp] 629 / 0 AT3G19340 640 / 0.0 Protein of unknown function (DUF3754) (.1) Potri.002G183900 [exp] 73 / 3e-13 AT2G46915 744 / 0.0 Protein of unknown function (DUF3754) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12576 [flax] [poplar] DUF3754 Protein of unknown function (DUF3754)
Representative CDS sequence Show only first row Show all	>Lus10012581 pacid=23143876 polypeptide=Lus10012581 locus=Lus10012581.g ID=Lus10012581.BGIv1.0 annot-version=v1.0 ATGGAGGAGAAGAAGCAAGACCACGATCCGCTTCTCATGAACAATACCCACAAGGCTACGCCGACGCCGGCGAACAACAAGCCAGCCACGAAGAGAGAAG TAATTCGTCTCGAGAAGGAATCCGTCATTCCAATTCTTAAACCCAAGCTCATCATGACCTTAGCCAATCTCATCGAACACAGCTCTGACCGTGCCGAGTT CCTTAAGCTCTGCAAGCGAGTTGAGTACACTATTCGAGCCTGGTACCTTCTCCAGTTTGAAGATCTCATGCAACTGTATTCTCTGTTCGACCCTGTGTCT GGAGAAGAGAAATTGAAACAACAGCACCTCACTCCCGATGATATCCTTACTCTTGAACAGAATTTCCTTACCTATTTGTTTCAGGTGATGGAAAAGAGTA ACTTCAAAATAGCAACTGATGAGGAGATTGAAATTGCTCTCTCTGGCCAGTATCTTTCTAATCTCCCAATAAAGGTGGACGAGTCCAAGCTTGACAAGAA GCTTTTGACCACTTATTTCAAGAATCATGCTCATTCCAACCTTCCAGATTTTGCAAACAAGTATGTCATCTTTCGTCGTGGCATTGGAATTGATCAAACA ACTGGCTATTTCTTCATGGAGAAAGTAGACATGCTTATCGGTCGTTTTTGGGCATATCTCCTAAGGATTACGAGGTTGGGGAAATTTCTCGCACGAAAGC CTAAAAAACAACGGAGAGACCCAACGAAAGATGACGACAATAGTTCCGAAGACAACAAGGACGAATTTTTTGTGGAACGCATCCGCCTTGAAAATATGGA ACTTAGCTTGGGGAATTTGCTGAGCAAGACAACAATTCAAGAACCTACGTTTGACAGGATAATAGTTGTTTATAGGCGAGCAAGTACCAAGGCAAAACTA GAACGTGGAGTGTATGTGAAGCATTTCAAAAACATACCAATGGCTGATATGGAAATAGTTCTTCCAGAAAAGAGAAATCCTGGGCTAACTCCAATGGACT GGGTGACGTTCTTAGTTTCTGCCATAGTTGGACTGGTGGCTGTAGTTAGTTCAATTGAATCACCCAAGGACGATCTCTGGGTTATGCTTGCTGTCCTCTC AACAGTTGTTGGCTACTGTGCTAAGACATACTTCACTTACCAGCAAAACTTGGCTGCATATCAAAACTTGATCACCCAGTCTATGTATGACAAACAGTTA GACAGTGGGAAGGGCACTCTTCTTCACCTGTGTGACGATGTGATTCAGCAAGAAGTGAAAGAGGTGATTATTTCGTTCTTTATATTGATGGAACAAGGCA AGGCTACTAGGGAGGATCTAGATTTGCGGTGCGAGGAATTACTAAAAGAAGAGTTTGGGGAGAGCTGTAATTTCGATGTAGACGATGCAGTAGAGAAGCT GGAGAAGCTTGGCATTGTTGCTAGGGATTCTCTTTCGAGGTACTACTGCGTAGGGCTGAAAAGGGCTAATGAGATAATTGGCACCACCACCGAAGAGGTA GTCCTCAAGGCGAAGCAGGGTGTTAGTTCCCAATAA
AA sequence Show only first row Show all	>Lus10012581 pacid=23143876 polypeptide=Lus10012581 locus=Lus10012581.g ID=Lus10012581.BGIv1.0 annot-version=v1.0 MEEKKQDHDPLLMNNTHKATPTPANNKPATKREVIRLEKESVIPILKPKLIMTLANLIEHSSDRAEFLKLCKRVEYTIRAWYLLQFEDLMQLYSLFDPVS GEEKLKQQHLTPDDILTLEQNFLTYLFQVMEKSNFKIATDEEIEIALSGQYLSNLPIKVDESKLDKKLLTTYFKNHAHSNLPDFANKYVIFRRGIGIDQT TGYFFMEKVDMLIGRFWAYLLRITRLGKFLARKPKKQRRDPTKDDDNSSEDNKDEFFVERIRLENMELSLGNLLSKTTIQEPTFDRIIVVYRRASTKAKL ERGVYVKHFKNIPMADMEIVLPEKRNPGLTPMDWVTFLVSAIVGLVAVVSSIESPKDDLWVMLAVLSTVVGYCAKTYFTYQQNLAAYQNLITQSMYDKQL DSGKGTLLHLCDDVIQQEVKEVIISFFILMEQGKATREDLDLRCEELLKEEFGESCNFDVDDAVEKLEKLGIVARDSLSRYYCVGLKRANEIIGTTTEEV VLKAKQGVSSQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19340			Protein of unknown function (D...		Lus10012581 [exp]	0	1
AT3G57040		ATRR4, ARR9	RESPONSE REGULATOR 4, response...		Lus10002750 [exp]	3.6	0.9000
AT4G35160			O-methyltransferase family pro...		Lus10023986 [exp]	4.5	0.8990
					Lus10007009 [exp]	6.3	0.8967
AT2G38760		ANN3, ANNAT3	annexin 3 (.1)		Lus10024174 [exp]	7.5	0.8863
AT5G01790			unknown protein		Lus10029060 [exp]	9.8	0.8857
AT2G41150			unknown protein		Lus10022403 [exp]	11.2	0.8604
AT2G16460			Protein of unknown function (D...		Lus10018079 [exp]	11.5	0.8544
AT1G67550		URE	urease (.1)		Lus10036993 [exp]	12.0	0.8721
AT5G51780	bHLH	bHLH036	basic helix-loop-helix (bHLH) ...		Lus10027394 [exp]	14.1	0.8852
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10022883 [exp]	14.1	0.8855

Compare expression of checked genes

Lus10012581 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.