Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36220 569 / 0 CYP84A1, FAH1, F5H1 ferulic acid 5-hydroxylase 1 (.1) AT5G04330 497 / 1e-173 Cytochrome P450 superfamily protein (.1) AT3G26310 272 / 5e-86 CYP71B35 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) AT5G07990 268 / 4e-84 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT3G26300 267 / 8e-84 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT4G31500 261 / 1e-81 SUR2, RNT1, RED1, ATR4, CYP83B1 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) AT1G01280 258 / 2e-80 CYP703A2 "cytochrome P450, family 703, subfamily A, polypeptide 2", cytochrome P450, family 703, subfamily A, polypeptide 2 (.1) AT3G26320 256 / 9e-80 CYP71B36 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) AT4G12320 254 / 1e-78 CYP706A6 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) AT3G26280 252 / 5e-78 CYP71B4 "cytochrome P450, family 71, subfamily B, polypeptide 4", cytochrome P450, family 71, subfamily B, polypeptide 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041511 [exp] 810 / 0 AT4G36220 687 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10034300 [exp] 794 / 0 AT4G36220 668 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10022303 [exp] 786 / 0 AT4G36220 680 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10041811 [exp] 633 / 0 AT4G36220 667 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10025975 [exp] 615 / 0 AT4G36220 728 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10014273 [exp] 614 / 0 AT4G36220 721 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10028361 [exp] 612 / 0 AT4G36220 725 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10000326 [exp] 608 / 0 AT4G36220 523 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10012583 [exp] 347 / 3e-119 AT4G36220 313 / 8e-106 ferulic acid 5-hydroxylase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G016400 [exp] 601 / 0 AT4G36220 761 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Potri.005G117500 [exp] 598 / 0 AT4G36220 728 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Potri.009G123600 [exp] 546 / 0 AT4G36220 672 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Potri.007G085000 [exp] 313 / 7e-101 AT5G07990 402 / 5e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G084700 [exp] 307 / 1e-99 AT5G07990 397 / 5e-134 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G084200 [exp] 307 / 2e-99 AT3G26300 385 / 1e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G082900 [exp] 298 / 4e-96 AT3G26300 377 / 2e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.015G085800 [exp] 296 / 5e-95 AT3G48270 479 / 7e-166 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) Potri.007G083500 [exp] 295 / 6e-95 AT3G26300 377 / 2e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.003G066400 [exp] 296 / 1e-94 AT5G07990 385 / 9e-129 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10012582 pacid=23143882 polypeptide=Lus10012582 locus=Lus10012582.g ID=Lus10012582.BGIv1.0 annot-version=v1.0 ATGGCTTCTCTCCTCCTTGTATTTCTCCTCACCACTATTCCTTTCATCCTCCTGTTGATGATGTTCCTCCGCAGTCGCCGCAACAGCAGCCGCCTACCTC TCCCGCCGGGCCCCAAAGGACTCCCAATCATTGGGAACATGTTAATGATGGACCAACTTACTCACCATGGCTTGACCAAACTTGCCAAGCAATACGGCGG CTTGTTCCATCTTCGTATGGGGAACATCAACATGATGACTGTCTCCTCCCCTGACATCGCAAAACAAGTTCTCAAGGTCCACGACAACATCTTCTCCAAC CGACCTACAAACATCGCCATCAACTACCTCACCTACGACCGTTCCGATATGGCCTTTGCTAACTACGGTCCCTTCTGGCGTCAGATGAGGAAAATCACTG TCATGAAGCTCTTCAGCAGGAGGAGGGCTGAGTCTTGGAACTCCGTTAGGGACGAGATCTCTTCCATGGTTCAAACTGTGGCCGCCAACCCAGCTGGAAA CCCCATCAACGTCGGGGAGCTTATATTCACCTTCACCATGAATCTTACTTATAAAGCCGCCTTTGGCACCTCCACCAAGATGAATGACCAGATGCAAGAG TTCATTAAGATACTCCAAGAGTTCTCCAGACTCTTTGGGGCTTTCAACATTGCTGACTTCATCCCCTTTCTTGGCTGGATGGACCCACAAGGACTTCGTC CTAGGATGGTCAACGCAAGGTCCTCCCTCGACAACTTCATCGACCAAATCATGGATGATCATCTTCGTACTCAAGATGATCACGAAGTTCGTAGCCCCGA CATGGTTGACGAGTTGCTTGCTTTCTACACTCCTCATGATCAACCAACAAATAATTCCAATCTTGTGACGATGAATGACAGCGGGCAAAAGACGCCTCCA CCCGACGTTGTGGGGCACACCCGCCACGTGGAAGAGACGGATTTGGAGAAGTTAACCTTCCTCAAGTGCATCTTGAAAGAGACTCTCCGCCTCCACCCTG CGATCCCTCTCCTCCTCCACGAGACTGCTGAGGATGTCGAGGTCTCCGGTTACTTCATCCCCAAAAGGTCTCGAGTTATGATTAATGCTTTTGCTATCGG ACGAGACCCCAACTCTTGGTCCAATCCCGACGAGTTCATCCCATCAAGGTTCTTGAATGAAGGCATGCCTGACTTCAAGGGCAACAACTTCGAGTTCTTG CCTTTCGGTTCGGGCCGTAGGTCCTGTCCGGGCATGCAACTCGGCTTGTACGCAATCGAACTCGGAATAGCTCACCTTCTCCACGACTTTAACTGGGAAT TACCTTACGGGATGAAACCCGACGAAGTTGATATGACTGATGTCTTCGGACTCACTGCTCCTCGTGCCACCAGACTCATTGCCGTTCCTACCTCTCGACT TGCTTGTTAA
AA sequence Show only first row Show all	>Lus10012582 pacid=23143882 polypeptide=Lus10012582 locus=Lus10012582.g ID=Lus10012582.BGIv1.0 annot-version=v1.0 MASLLLVFLLTTIPFILLLMMFLRSRRNSSRLPLPPGPKGLPIIGNMLMMDQLTHHGLTKLAKQYGGLFHLRMGNINMMTVSSPDIAKQVLKVHDNIFSN RPTNIAINYLTYDRSDMAFANYGPFWRQMRKITVMKLFSRRRAESWNSVRDEISSMVQTVAANPAGNPINVGELIFTFTMNLTYKAAFGTSTKMNDQMQE FIKILQEFSRLFGAFNIADFIPFLGWMDPQGLRPRMVNARSSLDNFIDQIMDDHLRTQDDHEVRSPDMVDELLAFYTPHDQPTNNSNLVTMNDSGQKTPP PDVVGHTRHVEETDLEKLTFLKCILKETLRLHPAIPLLLHETAEDVEVSGYFIPKRSRVMINAFAIGRDPNSWSNPDEFIPSRFLNEGMPDFKGNNFEFL PFGSGRRSCPGMQLGLYAIELGIAHLLHDFNWELPYGMKPDEVDMTDVFGLTAPRATRLIAVPTSRLAC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10012582 [exp]	0	1
AT2G38740			Haloacid dehalogenase-like hyd...		Lus10030929 [exp]	4.6	0.9566
AT3G23770			O-Glycosyl hydrolases family 1...		Lus10008881 [exp]	8.4	0.9354
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10040761 [exp]	9.6	0.9364
AT2G47485			unknown protein		Lus10009156 [exp]	12.6	0.9497
AT5G44390			FAD-binding Berberine family p...		Lus10038442 [exp]	21.5	0.9353
					Lus10027919 [exp]	24.9	0.9397
AT5G64250			Aldolase-type TIM barrel famil...		Lus10003271 [exp]	29.3	0.9340
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10024076 [exp]	40.7	0.9310
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10013594 [exp]	41.6	0.9336
AT5G45020			Glutathione S-transferase fami...		Lus10026012 [exp]	45.1	0.9229

Compare expression of checked genes

Lus10012582 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.