Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36220 311 / 3e-105 CYP84A1, FAH1, F5H1 ferulic acid 5-hydroxylase 1 (.1) AT5G04330 272 / 8e-90 Cytochrome P450 superfamily protein (.1) AT2G40890 183 / 1e-55 REF8, CYP98A3, C3H1 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) AT2G45550 180 / 1e-54 CYP76C4 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) AT4G31500 179 / 4e-54 SUR2, RNT1, RED1, ATR4, CYP83B1 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) AT3G26300 179 / 6e-54 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT3G61040 178 / 6e-54 CYP76C7 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) AT1G33730 175 / 6e-54 CYP76C5 "cytochrome P450, family 76, subfamily C, polypeptide 5", cytochrome P450, family 76, subfamily C, polypeptide 5 (.1) AT3G26180 175 / 9e-54 CYP71B20 "cytochrome P450, family 71, subfamily B, polypeptide 20", cytochrome P450, family 71, subfamily B, polypeptide 20 (.1.2) AT1G33720 178 / 1e-53 CYP76C6 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041511 [exp] 384 / 7e-134 AT4G36220 687 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10034300 [exp] 377 / 5e-131 AT4G36220 668 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10000326 [exp] 368 / 4e-129 AT4G36220 523 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10022303 [exp] 370 / 3e-128 AT4G36220 680 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10012582 [exp] 345 / 4e-119 AT4G36220 578 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10014273 [exp] 335 / 3e-114 AT4G36220 721 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10028361 [exp] 327 / 2e-111 AT4G36220 725 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10025975 [exp] 321 / 4e-109 AT4G36220 728 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10041811 [exp] 320 / 4e-109 AT4G36220 667 / 0.0 ferulic acid 5-hydroxylase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G117500 [exp] 315 / 8e-107 AT4G36220 728 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Potri.007G016400 [exp] 315 / 1e-106 AT4G36220 761 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Potri.009G123600 [exp] 302 / 1e-101 AT4G36220 672 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Potri.007G085000 [exp] 214 / 6e-67 AT5G07990 402 / 5e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G084200 [exp] 212 / 7e-67 AT3G26300 385 / 1e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G084700 [exp] 208 / 3e-65 AT5G07990 397 / 5e-134 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G083000 [exp] 203 / 2e-63 AT3G26330 368 / 8e-123 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Potri.007G084800 [exp] 202 / 5e-63 AT3G26300 380 / 3e-127 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G082900 [exp] 201 / 1e-62 AT3G26300 377 / 2e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G083500 [exp] 199 / 1e-61 AT3G26300 377 / 2e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10012583 pacid=23143819 polypeptide=Lus10012583 locus=Lus10012583.g ID=Lus10012583.BGIv1.0 annot-version=v1.0 ATGGCCGAGTTGTTGAAGAGTCCTCAAGATTTGAAGCGGGTTCAGCAAGAGCTCGCTGACGTTGTTGGGCTCAACCGTCACGTGGAAGAGAAGGACTTGG AGAAGTTAACCTTCCTCAAGTGCATCTTGAAAGAGACTCTCCGCCTCCACCCTGCGATCCCTCTCCTCCTCCACGAGACTGCTGAGGATGTCGAGGTCTC CGGTTACTTCATCCCCAAAAGGTCTCGAGTTATGATTAATGCTTTTGCTATCGGACGAGACCCCAACTCTTGGTCCAATCCCGACGAGTTCATCCCATCA AGGTTCTTGAATGAAGGCATGCCTGACTTCAAGGGCAACAACTTCGAGTTCTTGCCTTTCGGTTCGGGCCGTAGGTCCTGTCCGGGCATGCAACTCGGCT TGTATGCAATCGAACTCGGAATAGCTCACCTTCTCCACGACTTTAATTGGGAATTACCTTACGGGATGAAACCCGACGAAGTTGATATGACTGATGTCTT CGGACTCACTGCTCCTCGTGCCACCCGATTCATTGCCGTTCCTACCTCCCGACTTGCTTGTTAA
AA sequence Show only first row Show all	>Lus10012583 pacid=23143819 polypeptide=Lus10012583 locus=Lus10012583.g ID=Lus10012583.BGIv1.0 annot-version=v1.0 MAELLKSPQDLKRVQQELADVVGLNRHVEEKDLEKLTFLKCILKETLRLHPAIPLLLHETAEDVEVSGYFIPKRSRVMINAFAIGRDPNSWSNPDEFIPS RFLNEGMPDFKGNNFEFLPFGSGRRSCPGMQLGLYAIELGIAHLLHDFNWELPYGMKPDEVDMTDVFGLTAPRATRFIAVPTSRLAC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10012583 [exp]	0	1
AT1G55230			Family of unknown function (DU...		Lus10013749 [exp]	1.0	0.9912
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10022303 [exp]	2.4	0.9875
AT5G39650		DAU2	DUO1-activated unknown 2, Prot...		Lus10012821 [exp]	2.8	0.9804
AT1G73260		ATKTI1	ARABIDOPSIS THALIANA KUNITZ TR...		Lus10004223 [exp]	3.5	0.9847
AT2G23770			protein kinase family protein ...		Lus10018788 [exp]	3.5	0.9812
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10041511 [exp]	5.5	0.9828
AT1G14550			Peroxidase superfamily protein...		Lus10024209 [exp]	5.9	0.9807
AT1G14550			Peroxidase superfamily protein...		Lus10024205 [exp]	6.0	0.9784
AT1G35210			unknown protein		Lus10036476 [exp]	6.0	0.9833
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Lus10032950 [exp]	6.7	0.9714

Compare expression of checked genes

Lus10012583 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.