Plant FIBer expression Database

Lus10012584 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G19340 576 / 0 Protein of unknown function (DUF3754) (.1)
AT5G13940 562 / 0 aminopeptidases (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041510
[exp]
844 / 0 AT3G19340 579 / 0.0 Protein of unknown function (DUF3754) (.1)
Lus10012581
[exp]
580 / 0 AT3G19340 787 / 0.0 Protein of unknown function (DUF3754) (.1)
Lus10031975
[exp]
557 / 0 AT3G19340 754 / 0.0 Protein of unknown function (DUF3754) (.1)
Lus10041512
[exp]
550 / 0 AT3G19340 756 / 0.0 Protein of unknown function (DUF3754) (.1)
Lus10035127
[exp]
545 / 0 AT3G19340 749 / 0.0 Protein of unknown function (DUF3754) (.1)
Lus10004371
[exp]
84 / 9e-17 AT5G47240 410 / 2e-139 nudix hydrolase homolog 8 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G144500
[exp]
660 / 0 AT3G19340 640 / 0.0 Protein of unknown function (DUF3754) (.1)
Potri.002G237700
[exp]
610 / 0 AT3G19340 813 / 0.0 Protein of unknown function (DUF3754) (.1)
Potri.014G144300
[exp]
589 / 0 AT3G19340 771 / 0.0 Protein of unknown function (DUF3754) (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF12576 DUF3754 Protein of unknown function (DUF3754)
Representative CDS sequence
>Lus10012584 pacid=23143828 polypeptide=Lus10012584 locus=Lus10012584.g ID=Lus10012584.BGIv1.0 annot-version=v1.0
ATGGGAAAGAAGAAGGATATAATAAGATTGGAGAGGGAATCGGTGATTCCAATTGTGAAGCGCAAGATCGTTGCTACTTTATCCAACCGCATTGAGGGGA
ATATGGAGAAGGAGGAGTTCGGGAGGCTATGCCAGAGAGCGGAATACACGATCAGAGCATGGTACCTTCTCCATTTCGAGGAGATGATGCAGCTCTACGC
ATTGTTCGAGCCCGTCCATGGAGACCGCAAGATCGAGCAGCAGAACCTCACCCCTGAGGACGTCGACATCTGCGAGCGCAACTTCCTCAACTGCCTCTTC
CAGGTCATGGAACGCAGCAATTTCAAGGTCACCACCGACGCCGAGATCGAGGTCGCCCTCTCCGCCCAGTACCGCCTGAATCTCCCCATCGTCGTCGACG
ATTCCAAGGCATGTTATTCTTGTCATCAATTTAAACCTAAACGAAACGGAACTCTGTACTTTACCAAGTACCCCAAGGATAACCTACCTTATTTTGCCGA
CAAGTTCATCATATTCAGACGAGGGTTTGGGATTGATCACATGGAAGCTTACTTCATCAAACATAAGATCAATACCATCATCCCAAGTGATCTGATATGG
TCATCAACTTGCAGGCTGAAATGGCTATTGTTTCCAAAGAAGGCAAAGAAGCCAAGTCCAAAACCAGCAGCAGCAGCAGTAGTACCAGAGCCATCTAATG
AGGGGGAACCTAATGCTGTTGGAGTCAGCATCGATGTGGATAATGATGACAGCAGCGACAGCGACGACGATGAAGATCTCTTCGTGGAACGAATTCGCAT
CGAGAAAATGCCACTCAGCTTCCTGAATCTTTTTGGGAAAGTAACCATCCAGGAGCCCACCTTCGATCGTATCATTGTTGTTTACAGGAGAGTAAGCAGC
TGCGACAAAAAGGAAACGGAGAAGAATATTTACGTTAAGCACTTCAAGGGAATACCCATGGCAGATATGGAGATCGTACTGCCAGAGAAGAAGAACCCAG
GGCTAACCCCAATGGACTGGGTGAAGTTCCTTGTATCCGCCCTCATCGGTCTGGGAACGGTGGTTGGGTCCTTGAGTGTGCCGAAAGCTGACATCAGGGT
AATCTTCGCCATCCTCACATCAGTGGTTGGCTATTGCGTCAAAACGTATTTCACCTTCCAGAGTAACTTGGTGTCTTATCAAAGTCTGATCACCCAGTCA
GTGTATGATAAACAACTGGACAGTGGGAGGGGCACTCTGCTTCACTTGTGCGATGAGGTCATTCAACAGGAAGTGAAAGAGGTTATTATATCCTTCTTCA
TCCTGATGGAGCAAGGAGATGCCACAAGACAGGAGCTAGACCAAAGGTGTGAGGATATGATCAAGGCAGAATTCGGCGAGAACTGCAACTTTGATGTTGA
CGACGCCCTCCAGAAGCTAGAGAAACTCGGTATCGACGCAGGTGGAAAGTACAGCTGCGCTGGATTGAAGGAAGCCAACGATATTATTGGCACCACCACG
GAGGAGGTGGTTCTTAAGGCTACAGGCGGTGCTTCTCTTTTCAGCGACTTCACCGCAAACCTTCTCGAGTATTAA
AA sequence
>Lus10012584 pacid=23143828 polypeptide=Lus10012584 locus=Lus10012584.g ID=Lus10012584.BGIv1.0 annot-version=v1.0
MGKKKDIIRLERESVIPIVKRKIVATLSNRIEGNMEKEEFGRLCQRAEYTIRAWYLLHFEEMMQLYALFEPVHGDRKIEQQNLTPEDVDICERNFLNCLF
QVMERSNFKVTTDAEIEVALSAQYRLNLPIVVDDSKACYSCHQFKPKRNGTLYFTKYPKDNLPYFADKFIIFRRGFGIDHMEAYFIKHKINTIIPSDLIW
SSTCRLKWLLFPKKAKKPSPKPAAAAVVPEPSNEGEPNAVGVSIDVDNDDSSDSDDDEDLFVERIRIEKMPLSFLNLFGKVTIQEPTFDRIIVVYRRVSS
CDKKETEKNIYVKHFKGIPMADMEIVLPEKKNPGLTPMDWVKFLVSALIGLGTVVGSLSVPKADIRVIFAILTSVVGYCVKTYFTFQSNLVSYQSLITQS
VYDKQLDSGRGTLLHLCDEVIQQEVKEVIISFFILMEQGDATRQELDQRCEDMIKAEFGENCNFDVDDALQKLEKLGIDAGGKYSCAGLKEANDIIGTTT
EEVVLKATGGASLFSDFTANLLEY

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G19340 Protein of unknown function (D... Lus10012584
[exp]
0 1
AT3G19340 Protein of unknown function (D... Lus10041510
[exp]
4.4 0.7190
AT4G39420 unknown protein Lus10008760
[exp]
8.1 0.7655
AT4G24700 unknown protein Lus10017951
[exp]
13.4 0.7582
AT3G04690 ANX1 ANXUR1, Malectin/receptor-like... Lus10042537
[exp]
15.8 0.6011
AT2G36540 Haloacid dehalogenase-like hyd... Lus10019760
[exp]
17.1 0.7354
AT1G80780 Polynucleotidyl transferase, r... Lus10032797
[exp]
21.2 0.6221
AT5G10530 Concanavalin A-like lectin pro... Lus10042309
[exp]
22.2 0.7351
AT2G25930 PYK20, ELF3 EARLY FLOWERING 3, hydroxyprol... Lus10006857
[exp]
25.5 0.7293
AT2G44810 DAD1 DEFECTIVE ANTHER DEHISCENCE 1,... Lus10042914
[exp]
25.8 0.7272
AT5G15110 Pectate lyase family protein (... Lus10013267
[exp]
28.3 0.6272

Lus10012584 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.