Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26700 424 / 9e-149 Protein kinase superfamily protein (.1) AT5G38560 179 / 1e-50 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) AT1G09440 175 / 1e-50 Protein kinase superfamily protein (.1) AT3G24540 174 / 8e-50 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT2G02800 170 / 5e-49 Kin2, APK2B protein kinase 2B (.1.2) AT1G76370 167 / 2e-48 Protein kinase superfamily protein (.1) AT1G61860 167 / 4e-48 Protein kinase superfamily protein (.1) AT3G24550 171 / 7e-48 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT2G28590 167 / 8e-48 Protein kinase superfamily protein (.1) AT3G59110 169 / 9e-48 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041509 [exp] 665 / 0 AT3G26700 469 / 4e-166 Protein kinase superfamily protein (.1) Lus10002882 [exp] 278 / 3e-91 AT3G26700 323 / 3e-108 Protein kinase superfamily protein (.1) Lus10016021 [exp] 174 / 7e-51 AT1G20650 516 / 0.0 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) Lus10034082 [exp] 175 / 9e-49 AT5G38560 700 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Lus10003066 [exp] 172 / 5e-48 AT5G38560 707 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Lus10030741 [exp] 167 / 5e-48 AT1G20650 523 / 0.0 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) Lus10013014 [exp] 166 / 4e-47 AT1G23540 572 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) Lus10003533 [exp] 167 / 5e-47 AT5G16500 468 / 1e-159 Protein kinase superfamily protein (.1) Lus10006215 [exp] 165 / 5e-47 AT1G56720 599 / 0.0 Protein kinase superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G144800 [exp] 473 / 1e-167 AT3G26700 439 / 3e-154 Protein kinase superfamily protein (.1) Potri.002G237600 [exp] 468 / 8e-166 AT3G26700 445 / 2e-156 Protein kinase superfamily protein (.1) Potri.010G001600 [exp] 172 / 3e-49 AT5G18500 635 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G093700 [exp] 169 / 6e-49 AT2G02800 627 / 0.0 protein kinase 2B (.1.2) Potri.008G214200 [exp] 171 / 8e-49 AT5G18500 659 / 0.0 Protein kinase superfamily protein (.1.2) Potri.011G164700 [exp] 174 / 2e-48 AT1G30570 1086 / 0.0 hercules receptor kinase 2 (.1) Potri.002G009300 [exp] 167 / 4e-48 AT1G20650 548 / 0.0 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) Potri.003G053301 [exp] 169 / 1e-47 AT1G52290 531 / 0.0 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) Potri.001G467000 [exp] 172 / 2e-47 AT1G30570 1090 / 0.0 hercules receptor kinase 2 (.1) Potri.002G059000 [exp] 168 / 2e-47 AT3G59110 704 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10012585 pacid=23143887 polypeptide=Lus10012585 locus=Lus10012585.g ID=Lus10012585.BGIv1.0 annot-version=v1.0 ATGTCAAGGACTCTTGCAGGCATCCTAGGAGGTGCAGGATCCTTGGCATTATTGGTTGTGATATTTCTTGCCTATCTAATATGGACCAAATTATGCGTCT CCAAACGCAATAGTGTCTCCCGAACCTCCGACACTGGATCTTCTGACCCATCTCTTCAAGCTGGAAGACATGCTGGAGTTGAGGTATCAATACATGAGGC TAAGCGCTTTGTTATGGAAGAACTGTCTCTGGCCACCAAAAATTTTAGCCACAAGAACTTGATCGGTGTAGGCAAATTCGGAGAGGTATACAAGGGTTTG CTTGAAAATGGGATGCTTGTAGCTGTGAAAAAGCGATTTGGAGCACCTACTCAAGATTTTGTTGATGAGGTACGGTATCTTTCGTCTATTCAGCATCGCA ACATTGTGACTCTGTTGGGTTACTGTGAGGAGAACACAATGCAGTACCTCATCTATGAATATGTACCCAGTGGCAGCGTTTCCAGTCACTTGTACGGTCT GGATTATCTTCACTCCCTGAGGCCTCGCTTAGTGCACAAGAATTTCAAGACGGCTAACGTGCTGGTGGACGAGAATTTCATAGCTAAGGTTGCAGATGCA GGGCTGCGGAATTTCCTGGGAAGAGTTGAAAGTACTGCAGGCCCTTCTTCCCAAGTGACCGCAGATGAGATATTTCTTGCTCCAGAGGTGAGGGAGTTCA GACGATTCTCTGAGAAAAGTGATGTGTACAGTTTTGGTGTGTTTCTCGTGGAGTTGATCACCGGAAGGGAAGCAACAGAAGAGAATATCGTGGAATGGGT GGAAAGCAGCGGAAGGGAGGAGGGTATTAGCAGAGTTGAGGGGAGGATGGTGGATGAGAGGTTGGGGAGCAGTTTCACGGCAGAAGGAATGGAAGAGCTG ATGAAGTTGGCGGAGCGGTGCTTGGAGGCGTCGAGTGAGAGGAGGCCCGGGATGAGCAATTTGGTGATGGAGCTGGACAGAATTCTGGAGAAAGAGATGA AGGTGACTACTGGTATGGGGGAAGGTACTGCTCCAACTGTGACTCTGGGAAGCCAGTTGTTCAGGCCTTAA
AA sequence Show only first row Show all	>Lus10012585 pacid=23143887 polypeptide=Lus10012585 locus=Lus10012585.g ID=Lus10012585.BGIv1.0 annot-version=v1.0 MSRTLAGILGGAGSLALLVVIFLAYLIWTKLCVSKRNSVSRTSDTGSSDPSLQAGRHAGVEVSIHEAKRFVMEELSLATKNFSHKNLIGVGKFGEVYKGL LENGMLVAVKKRFGAPTQDFVDEVRYLSSIQHRNIVTLLGYCEENTMQYLIYEYVPSGSVSSHLYGLDYLHSLRPRLVHKNFKTANVLVDENFIAKVADA GLRNFLGRVESTAGPSSQVTADEIFLAPEVREFRRFSEKSDVYSFGVFLVELITGREATEENIVEWVESSGREEGISRVEGRMVDERLGSSFTAEGMEEL MKLAERCLEASSERRPGMSNLVMELDRILEKEMKVTTGMGEGTAPTVTLGSQLFRP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26700			Protein kinase superfamily pro...		Lus10012585 [exp]	0	1
AT1G02000		GAE2	UDP-D-glucuronate 4-epimerase ...		Lus10027195 [exp]	8.4	0.7548
AT5G62890			Xanthine/uracil permease famil...		Lus10004228 [exp]	9.9	0.7368
AT4G31600			UDP-N-acetylglucosamine (UAA) ...		Lus10020119 [exp]	10.4	0.7260
AT4G35320			unknown protein		Lus10022985 [exp]	12.4	0.7364
AT1G68330			unknown protein		Lus10041430 [exp]	14.5	0.6857
AT1G27200			Domain of unknown function (DU...		Lus10036676 [exp]	14.8	0.7348
AT1G21000			PLATZ transcription factor fam...		Lus10035554 [exp]	17.0	0.7342
AT2G17550			unknown protein		Lus10035987 [exp]	19.5	0.7362
AT4G16444			unknown protein		Lus10035992 [exp]	19.6	0.7273
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10016777 [exp]	22.8	0.6323

Compare expression of checked genes

Lus10012585 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.