Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13930 226 / 8e-72 ATCHS, TT4, CHS TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) AT4G00040 97 / 5e-23 Chalcone and stilbene synthase family protein (.1) AT4G34850 91 / 7e-21 LAP5 LESS ADHESIVE POLLEN 5, Chalcone and stilbene synthase family protein (.1) AT1G02050 72 / 3e-14 LAP6 LESS ADHESIVE POLLEN 6, Chalcone and stilbene synthase family protein (.1) AT4G34520 45 / 4e-05 KCS18, FAE1 FATTY ACID ELONGATION1, 3-ketoacyl-CoA synthase 18 (.1) AT5G43760 42 / 0.0002 KCS20 3-ketoacyl-CoA synthase 20 (.1) AT4G34510 42 / 0.0005 KCS17, KCS2 3-ketoacyl-CoA synthase 17 (.1) AT1G19440 41 / 0.0006 KCS4 3-ketoacyl-CoA synthase 4 (.1) AT1G71160 40 / 0.001 KCS7 3-ketoacyl-CoA synthase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041508 [exp] 229 / 1e-73 AT5G13930 473 / 5e-168 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10011745 [exp] 223 / 8e-73 AT5G13930 389 / 6e-137 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10023670 [exp] 225 / 1e-70 AT5G13930 693 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10011744 [exp] 204 / 2e-66 AT5G13930 283 / 4e-96 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10011746 [exp] 173 / 1e-51 AT5G13930 524 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10031622 [exp] 172 / 3e-51 AT5G13930 526 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10033717 [exp] 171 / 1e-50 AT5G13930 518 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10041507 [exp] 123 / 5e-36 AT5G13930 100 / 4e-27 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10026286 [exp] 97 / 1e-22 AT4G34850 650 / 0.0 LESS ADHESIVE POLLEN 5, Chalcone and stilbene synthase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G145100 [exp] 229 / 3e-73 AT5G13930 679 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.001G051500 [exp] 221 / 4e-70 AT5G13930 692 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.001G051600 [exp] 219 / 2e-69 AT5G13930 692 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.003G176800 [exp] 218 / 1e-68 AT5G13930 693 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.003G176900 [exp] 218 / 1e-68 AT5G13930 694 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.003G176700 [exp] 210 / 8e-66 AT5G13930 684 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.012G138800 [exp] 191 / 3e-58 AT5G13930 531 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.001G028600 [exp] 180 / 3e-54 AT5G13930 510 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.005G175200 [exp] 143 / 7e-41 AT5G13930 425 / 2e-149 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.003G195150 [exp] 99 / 7e-25 AT5G13930 106 / 4e-05 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [flax] [poplar] Thiolase PF02797 [flax] [poplar] Chal_sti_synt_C Chalcone and stilbene synthases, C-terminal domain CL0046 [flax] [poplar] Thiolase PF00195 [flax] [poplar] Chal_sti_synt_N Chalcone and stilbene synthases, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10012586 pacid=23143880 polypeptide=Lus10012586 locus=Lus10012586.g ID=Lus10012586.BGIv1.0 annot-version=v1.0 ATGGCGGCCAGTGAAGGAGCAGCCAAGGTAGCCGAGATCCGAGCGGCTCAGCGAGCTAGTGGTCCGGCGACGGTTCTGGCCATTGGAACTGCTACCCCCC AAAACTGCGTGATCCAGGCCGACTACCCCGACTACTACTTCCGCATCACCAACAGCGAACATATGACTGACCTCAAGCTCAAATTCAAACGCATGTGTGA AAAGTCGATGATAAGGAAGCGATACATGCACATAACGGAGGACTACCTAAAGGAAAACCCAAGCATGTGCGCTTACATGGCGCCGTCGCTGGACGCCCGC CAGGACTTGGTGGTCGTCGAAGTCCCAAAGCTCGGGAAAGAAGCAGCCACCAAGGCAATCAAAGAGTGGGGCCAGCCCAAATCCAAAATCACCCACCTCG GGGCCATCGACGGTCATCTCCGGGAAGTGGGGTTGACTTTCCACTTGTTGAAAGACGTGCCCGGGTTGATTTCCAAGAACATTGAGAAGAGTCTTGTGGA GGCGTTTAAGCCGTTGGGAATCAGTGACTGGAACTCGCTGTTCTGGATAGCGCATCCTGGTGGGCCTGCTATTCTGGACCAGGTGGAGGAGAAGCTTGGG CTTAAGCCGGAGAAGATGCGGGCCACGAGGGAGGTGTTGAAGGAGTACGGGAACATGTCTAGCGCGTGTGTTCTGTTCATACTGGATGAGATGAGGAAGA AGTCGGCGGAGGAAGGGAAGTTGACCAACGGGGAAGGGCTGGAATGGGGTGTGCTGTTCGGGTTGGGGGGGGGTGGTGTCATCTCATGTCTGGGATGCTT TCTTAAAAGTGGAATGTATTTAATTTGGCGTGTTTAA
AA sequence Show only first row Show all	>Lus10012586 pacid=23143880 polypeptide=Lus10012586 locus=Lus10012586.g ID=Lus10012586.BGIv1.0 annot-version=v1.0 MAASEGAAKVAEIRAAQRASGPATVLAIGTATPQNCVIQADYPDYYFRITNSEHMTDLKLKFKRMCEKSMIRKRYMHITEDYLKENPSMCAYMAPSLDAR QDLVVVEVPKLGKEAATKAIKEWGQPKSKITHLGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLVEAFKPLGISDWNSLFWIAHPGGPAILDQVEEKLG LKPEKMRATREVLKEYGNMSSACVLFILDEMRKKSAEEGKLTNGEGLEWGVLFGLGGGGVISCLGCFLKSGMYLIWRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10012586 [exp]	0	1
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10041507 [exp]	1.0	0.9935
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10041508 [exp]	2.0	0.9537
AT1G20925			Auxin efflux carrier family pr...		Lus10030715 [exp]	2.8	0.9161
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Lus10040525 [exp]	3.0	0.9255
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Lus10003195 [exp]	4.0	0.8730
AT4G21200		ATGA2OX8	ARABIDOPSIS THALIANA GIBBERELL...		Lus10006759 [exp]	4.5	0.8863
AT5G37060		ATCHX24	cation/H+ exchanger 24, ARABID...		Lus10031283 [exp]	6.0	0.8836
AT5G05690		CBB3, DWF3, CYP...	DWARF 3, CYTOCHROME P450 90A1,...		Lus10028297 [exp]	6.5	0.8491
AT5G56750		NDL1	N-MYC downregulated-like 1 (.1...		Lus10026433 [exp]	6.5	0.8431
AT5G49330	MYB	PFG3, ATMYB111	PRODUCTION OF FLAVONOL GLYCOSI...		Lus10016855 [exp]	6.6	0.8622

Compare expression of checked genes

Lus10012586 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.