Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02060 1166 / 0 DEAD/DEAH box helicase, putative (.1.2) AT2G01440 211 / 1e-56 DEAD/DEAH box RNA helicase family protein (.1) AT3G22330 59 / 1e-08 ATRH53, PMH2 putative mitochondrial RNA helicase 2 (.1) AT5G26742 58 / 3e-08 EMB1138 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) AT3G22310 50 / 9e-06 ATRH9, PMH1 RNA HELICASE 9, putative mitochondrial RNA helicase 1 (.1) AT4G16630 49 / 1e-05 DEA(D/H)-box RNA helicase family protein (.1) AT1G71370 49 / 1e-05 DEA(D/H)-box RNA helicase family protein (.1) AT5G14610 47 / 6e-05 DEAD box RNA helicase family protein (.1.2) AT3G58570 47 / 9e-05 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G42520 45 / 0.0001 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041506 [exp] 1517 / 0 AT3G02060 1230 / 0.0 DEAD/DEAH box helicase, putative (.1.2) Lus10034589 [exp] 205 / 2e-57 AT2G01440 769 / 0.0 DEAD/DEAH box RNA helicase family protein (.1) Lus10030075 [exp] 59 / 2e-08 AT3G58570 603 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10001074 [exp] 57 / 4e-08 AT3G58570 533 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10001425 [exp] 56 / 1e-07 AT5G26742 859 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Lus10001057 [exp] 56 / 1e-07 AT5G26742 919 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Lus10035410 [exp] 55 / 2e-07 AT3G22330 692 / 0.0 putative mitochondrial RNA helicase 2 (.1) Lus10031012 [exp] 55 / 3e-07 AT3G22330 690 / 0.0 putative mitochondrial RNA helicase 2 (.1) Lus10038975 [exp] 51 / 3e-06 AT3G22330 639 / 0.0 putative mitochondrial RNA helicase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G145000 [exp] 1195 / 0 AT3G02060 1254 / 0.0 DEAD/DEAH box helicase, putative (.1.2) Potri.002G237400 [exp] 1180 / 0 AT3G02060 1270 / 0.0 DEAD/DEAH box helicase, putative (.1.2) Potri.010G112500 [exp] 207 / 3e-55 AT2G01440 1177 / 0.0 DEAD/DEAH box RNA helicase family protein (.1) Potri.005G000500 [exp] 57 / 4e-08 AT5G26742 885 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Potri.005G000100 [exp] 57 / 5e-08 AT5G26742 924 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Potri.006G024100 [exp] 56 / 1e-07 AT3G22330 654 / 0.0 putative mitochondrial RNA helicase 2 (.1) Potri.019G130900 [exp] 52 / 1e-06 AT1G55150 321 / 2e-103 DEA(D/H)-box RNA helicase family protein (.1) Potri.016G023100 [exp] 51 / 3e-06 AT3G22330 648 / 0.0 putative mitochondrial RNA helicase 2 (.1) Potri.005G241300 [exp] 50 / 5e-06 AT4G16630 829 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.010G152400 [exp] 47 / 8e-05 AT3G06480 801 / 0.0 DEAD box RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0123 [flax] [poplar] HTH PF02559 [flax] [poplar] CarD_CdnL_TRCF CarD-like/TRCF domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase CL0023 [flax] [poplar] PF03461 [flax] [poplar] TRCF TRCF domain
Representative CDS sequence Show only first row Show all	>Lus10012587 pacid=23143835 polypeptide=Lus10012587 locus=Lus10012587.g ID=Lus10012587.BGIv1.0 annot-version=v1.0 ATGGCTTCCCTCGATGCTTGCTCGTCCTCCTCGTCTTTCATCTCCACTCTCCACACACTACCGAATCAATTACGGACGGGGAATCTCTTCCACTTCAAAT GCCCTTCCTCTCACCGTTTCCTATCCTCATCCCCTTTCTCCGTCGTCCTCACCTCTTCTCTCCACGTCCCCTCCGCCACCTCCGCCGCCGCTATCCCCTC TCCAGCTCGATACCGTCCCAGCGCCGACACCGTTGACGACGGCAATGACCCTATCTCCCTTCTCAATCTCAGAATCCACAGCACCCGCTCCACTAGAGAC GATTACTCCTCCTCCTCCTCCAGGCCCGTGATGGACCCCCAGGAGGCCGACAAGTATATTCAGCTTGTGAAGGAGCAGCAGCAGCGAGGTTTGCAGAAGT TGAAAGGAGATAGGCAGTCCAACTCCGGCGGCGGCTTTAGCTACAAGGTCGACCCCTACACTCTTGTTGCTGGAGATTACGTCGTTCACCGGAAGGCCGG CATCGGGAAGTTTGTTGCTATCAAGTTCGATCTACCTAACAGTTCTTCTCGATCCGAACCTATTGAGTATGTCTTCCTCGAGTATGCTGACGGCATGGCC AAGCTCCCACTTCATCAGGCCTCTCGCTTGCTTTATCGTTACAATCTCCCCAACGAATCGAAAAAGCCCAAGACGCTTAGCAAATTGAGCGATCCCGGTG CATGGGAGAAGAGGAAGACCAAAGGTAAGGTTGCAATCCAGAGAATGGTTGTTGACTTAATGGAGCTGTATTTGCACCGATTGAAGCAAAGACGCCCTCC TTACCCGAAAAGTCCTGACATGGCTGGCTTTGATGCTCAGTTTCCTTACAACCCCACTCCCGATCAGAAGCAGGATTCTTGCATTTTCCATCTCCCCTTC GCGACTGACTTAGATAACATACTCCAGGCTTTCATTGACGTTGAGAGGGATCTAACCGAGAGGCAAACTCCAATGGACCGATTAATATGCGGGGACGTCG GTTTTGGGAAAACCGAAGTTGCTTTGCGTGCCATCTTTTGCGTGGTCTCAGCGGGAAAGCAAGCAATGATATTAGCACCAACAATTGTACTGGCCAAGCA ACATTTTGATGTTATTTCCGAACGTTTTTCCCGGTTCCCCAATATCAAAGTAGGACTTCTCAGTCGGTTTCAGACCAGAGCAGAAAAGATGTCATACCTG GGCATGATCGAACGTGGTGAGTTGAACATAGTTATTGGAACTCACTCTCTTCTTGGAAGTCGAGTGGTCTATAACAATCTCGGACTTCTTGTTGTAGACG AGGAACAGAGATTTGGTGTTAAACAGAAGGAGAAGATTGCTTCTCTCAAAACTTCTGTCGATGTTCTTACTCTCTCAGCAACTCCGATACCTCGAACGCT TTATTTAGCACTGACTGGCTTCCGTGATGCAAGTTTGATTTCCACTCCGCCACCTGAGAGGGTTCCTATAAGGACCCATTTATCACCCTATAACGAAGGA AAGGTAGCATTAGCGATACAAAATGAGCTGGATCGCGGTGGCCAGGTGTTTTATGTCTTGCCACGTATTAAAGGATTAGAAGAAGTTAATGATTTTCTCG AACGATCGTTTCCCGATGTTAAAATAGCCACTGCACATGGGAAGCTATACTCAAAGCAACTTGAGGAAACCATGGAGAAATTTGCATATGGTGAAATTAA GATTCTCATCTGTACAAATATTGTAGAAAGTGGGCTTGACATACCAAACGCAAATACCATCATAATCCAAGATGTTCAATTCTTTGGCCTATCACAATTG CATCAGCTGCGTGGAAGAGTGGGTCGGGCAGATAAGGAAGCTCATGCGTACCTATTTTATCCTGACAAGTCATCCCTAACTGAACAAGCACTGGAGAGGC TGCAAGCTATGGAAGAATGCGTAGATCTTGGACAAGGTTTCCAAATTGCTGAGAGAGACATGGGTATAAGAGGCTTTGGAACAATCTTCGGGGAGCAACA AACGGGAGATGTAGGGAACGTTGGCATCGATCTCTTCTTTGAAATGCTTTTCGAGAGCTTGTCCAAGGTTGAAGAACACTGTGTGGTATCAGTTCCTTAC AAATCCGTTCAGGTTGATCTGAATGTAACACCTCGCCATACTTCTGAGTATATAAATTTTCTGGACAACCCAATTGAAATTATCGAAGAAGCTGAGAAAG CTGCAGAGAAAGACATTTGGAGTCTGGTTGAGTTCACAGAAAATCTGCGGCGTCGATATGGAAAAGAACCCTACTCGATGGAAATATTACTGAAGAAGCT GTACGTGAGGAGAATGGCTGCAGATATGGGGATAACTAGAATTCATGCTTCAGGGAAGATGGTTGGGATGAAAACAAATATGAACAAGGGAGTTTTTAAA CTATTGACCGACTCGATGTCTTCAAATGCTCGTAGGAACAAATTGGTCCTTGAAGGAGACGTAATAAAGGCGGAATTGCTGCTGGAGCTACAGAGTGAAC AACTTCTAAACTGGGTATTTCAATGCTTGTCAGAACTCCATGCTTGTTTGCCTTCCGTCATGAAATACTAA
AA sequence Show only first row Show all	>Lus10012587 pacid=23143835 polypeptide=Lus10012587 locus=Lus10012587.g ID=Lus10012587.BGIv1.0 annot-version=v1.0 MASLDACSSSSSFISTLHTLPNQLRTGNLFHFKCPSSHRFLSSSPFSVVLTSSLHVPSATSAAAIPSPARYRPSADTVDDGNDPISLLNLRIHSTRSTRD DYSSSSSRPVMDPQEADKYIQLVKEQQQRGLQKLKGDRQSNSGGGFSYKVDPYTLVAGDYVVHRKAGIGKFVAIKFDLPNSSSRSEPIEYVFLEYADGMA KLPLHQASRLLYRYNLPNESKKPKTLSKLSDPGAWEKRKTKGKVAIQRMVVDLMELYLHRLKQRRPPYPKSPDMAGFDAQFPYNPTPDQKQDSCIFHLPF ATDLDNILQAFIDVERDLTERQTPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMILAPTIVLAKQHFDVISERFSRFPNIKVGLLSRFQTRAEKMSYL GMIERGELNIVIGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASLKTSVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERVPIRTHLSPYNEG KVALAIQNELDRGGQVFYVLPRIKGLEEVNDFLERSFPDVKIATAHGKLYSKQLEETMEKFAYGEIKILICTNIVESGLDIPNANTIIIQDVQFFGLSQL HQLRGRVGRADKEAHAYLFYPDKSSLTEQALERLQAMEECVDLGQGFQIAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHCVVSVPY KSVQVDLNVTPRHTSEYINFLDNPIEIIEEAEKAAEKDIWSLVEFTENLRRRYGKEPYSMEILLKKLYVRRMAADMGITRIHASGKMVGMKTNMNKGVFK LLTDSMSSNARRNKLVLEGDVIKAELLLELQSEQLLNWVFQCLSELHACLPSVMKY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02060			DEAD/DEAH box helicase, putati...		Lus10012587 [exp]	0	1
AT5G49030		OVA2	ovule abortion 2, tRNA synthet...		Lus10034171 [exp]	2.0	0.8943
AT3G61780		EMB1703	embryo defective 1703 (.1)		Lus10004004 [exp]	7.7	0.8747
AT1G48650			DEA(D/H)-box RNA helicase fami...		Lus10009012 [exp]	8.4	0.8846
AT1G12770		ISE1, EMB1586	INCREASED SIZE EXCLUSION LIMIT...		Lus10010686 [exp]	11.0	0.8840
AT1G19920		ASA1, APS2	ATP SULFURYLASE ARABIDOPSIS 1,...		Lus10033158 [exp]	12.0	0.8759
AT1G20890			unknown protein		Lus10005486 [exp]	15.3	0.8405
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Lus10040908 [exp]	15.4	0.8694
AT5G03420			5'-AMP-activated protein kinas...		Lus10023003 [exp]	15.7	0.8798
AT5G16120			alpha/beta-Hydrolases superfam...		Lus10028475 [exp]	16.1	0.8631
AT4G39460		SAMC1, SAMT1	SAM TRANSPORTER1, S-adenosylme...		Lus10005787 [exp]	17.7	0.8825

Compare expression of checked genes

Lus10012587 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.