Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13890 186 / 6e-57 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2), Family of unknown function (DUF716) (.3) AT1G55240 47 / 5e-06 Family of unknown function (DUF716) (.1) AT1G49470 41 / 0.0006 Family of unknown function (DUF716) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041505 [exp] 330 / 2e-113 AT5G13890 335 / 2e-115 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2), Family of unknown function (DUF716) (.3) Lus10011779 [exp] 60 / 4e-10 AT1G32120 69 / 9e-13 unknown protein Lus10002465 [exp] 47 / 6e-06 ND 58 / 4e-10 Lus10023842 [exp] 42 / 0.0003 AT1G49470 275 / 6e-92 Family of unknown function (DUF716) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G237200 [exp] 224 / 5e-72 AT5G13890 220 / 3e-70 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2), Family of unknown function (DUF716) (.3) Potri.008G170900 [exp] 65 / 1e-11 AT5G13890 50 / 7e-07 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2), Family of unknown function (DUF716) (.3) Potri.010G067000 [exp] 62 / 8e-11 AT5G13890 50 / 9e-07 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2), Family of unknown function (DUF716) (.3) Potri.009G108900 [exp] 47 / 1e-05 AT1G49470 308 / 5e-105 Family of unknown function (DUF716) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04819 [flax] [poplar] DUF716 Family of unknown function (DUF716)
Representative CDS sequence Show only first row Show all	>Lus10012588 pacid=23143831 polypeptide=Lus10012588 locus=Lus10012588.g ID=Lus10012588.BGIv1.0 annot-version=v1.0 ATGGCGGGTCTTTTCTACCAGATACTCTCGTCGTCGGCCCTGATATCGCTGGGATTATACCATCTCATTTCCTCAGCCCGCTCCTACCTCAAATCCCCTC AGTCGTACGCCGCCAAACCCTTCCATCCCTTCCCTAATCCATCCTCCTCCTCTCGACTGAGACGCCTCCCTCTATACCTTCTGATCCTCTTCCTCCTCGT CGCCTTCGCCCACCAAACCCTAATCTCCTCCGATTCCGACCCTCTCCTCAAAGGCCACACTCCCGTCCACCGCTTCACCTCCCTCCAGTCCGCCGCCGTT GTCTTCCTCTTCCTCCTCCTCTCCATCGCTCTCCTCGTCTCCGATTCCACCTCCTTCCTCCCTCTCCCTCCCGATCTATTCTTCGCCCTAGCCTCCGCCT TCTTCTTCCTCAGCTACTACGTCTCCTCCTCTTCCGCCTCCGTCCAGACTTCCGATCTCCAAGCCAAATGCGATTCCGTCTCCGCTCAAATCTCCGCCCT CGCTTCCCTACTCTGCCTGATCGTAGCTTGCCAGCCGAGGCTGTTCTTGGCCGATCTCGGACTCGGCGCTGCCGTGTGCTTGCAAGGACTATGGGTGCTC CAGACTGGGCTCTCCCTCTACGTGGAGGCTTTCATTCCGGAAGGATGCCACAGGTTGCTGGATGTGGTGAGTGGGGTGGAAGGCTCGACCAAGTGCGATA TCGAGGATTCGAGGTTGAGAGCTGTGGCGATATTGGATTTGGCATTCCTTCTCCATGTGATGTTCACTGCGGTTACCCTGCTTGTTGTATACGCTGTGGT GGCTAGGTCAGTTGGGGTCAAGAGATCTGGATCGTCGTCCTACGAGGCATTGCCCACTACTGCTTCTGATGTTAATCATATTCAGTTGAAGGCTTTGACC GGCACTCAGGCATGA
AA sequence Show only first row Show all	>Lus10012588 pacid=23143831 polypeptide=Lus10012588 locus=Lus10012588.g ID=Lus10012588.BGIv1.0 annot-version=v1.0 MAGLFYQILSSSALISLGLYHLISSARSYLKSPQSYAAKPFHPFPNPSSSSRLRRLPLYLLILFLLVAFAHQTLISSDSDPLLKGHTPVHRFTSLQSAAV VFLFLLLSIALLVSDSTSFLPLPPDLFFALASAFFFLSYYVSSSSASVQTSDLQAKCDSVSAQISALASLLCLIVACQPRLFLADLGLGAAVCLQGLWVL QTGLSLYVEAFIPEGCHRLLDVVSGVEGSTKCDIEDSRLRAVAILDLAFLLHVMFTAVTLLVVYAVVARSVGVKRSGSSSYEALPTTASDVNHIQLKALT GTQA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13890			Family of unknown function (DU...		Lus10012588 [exp]	0	1
AT5G06660			Protein of unknown function DU...		Lus10029308 [exp]	1.4	0.9560
AT1G17530		ATTIM23-1	translocase of inner mitochond...		Lus10008470 [exp]	2.0	0.9506
AT5G41670			6-phosphogluconate dehydrogena...		Lus10032341 [exp]	2.0	0.9398
AT5G52840			NADH-ubiquinone oxidoreductase...		Lus10027539 [exp]	2.2	0.9398
AT2G27260			Late embryogenesis abundant (L...		Lus10034173 [exp]	2.8	0.9365
AT5G47030			ATPase, F1 complex, delta/epsi...		Lus10001082 [exp]	3.5	0.9466
AT4G24330			Protein of unknown function (D...		Lus10015491 [exp]	4.5	0.9236
AT1G04980		ATPDI10, ATPDIL...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10029954 [exp]	4.8	0.9215
AT1G77130		PGSIP2, GUX3	glucuronic acid substitution o...		Lus10028623 [exp]	5.1	0.9178
AT4G27070		TSB2	tryptophan synthase beta-subun...		Lus10043059 [exp]	5.5	0.9396

Compare expression of checked genes

Lus10012588 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.