Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26670 644 / 0 Protein of unknown function (DUF803) (.1), Protein of unknown function (DUF803) (.2), Protein of unknown function (DUF803) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041504 [exp] 900 / 0 AT3G26670 642 / 0.0 Protein of unknown function (DUF803) (.1), Protein of unknown function (DUF803) (.2), Protein of unknown function (DUF803) (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G139700 [exp] 743 / 0 AT3G26670 647 / 0.0 Protein of unknown function (DUF803) (.1), Protein of unknown function (DUF803) (.2), Protein of unknown function (DUF803) (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF05653 [flax] [poplar] Mg_trans_NIPA Magnesium transporter NIPA
Representative CDS sequence Show only first row Show all	>Lus10012589 pacid=23143841 polypeptide=Lus10012589 locus=Lus10012589.g ID=Lus10012589.BGIv1.0 annot-version=v1.0 ATGGGGGAGTGGATTGTTGGTGCTGTCATTAACCTTTTCGGCAGCATTGCCATTAACTTTGGGACTAACCTCCTTAAAGTCGGCCATAATGAGCTAACAT TGGAAAATCATTTGAAGAGAGAAAGACGTTCACTCATGGACAGTGAGGGCATAGGCGGGAAGGTTCCATTGAAGTCTGTTATACACTTCCAGAGTTGGAG GGTTGGTATCGTGTTTTTCTTTCTTGGAAACTGCCTTAACTTTGTTTCTTTCGGATATGCTGCACAGTCACTTCTTGCTGCCCTTGGGTCTGTTCAATTT GTGTCCAATATCGCATTTGCTTACTTCGTGTTCAACAAAATGGTGACCGTCAAGGTCCTTGTTGCTACAGCCTTTATTGTCCTAGGAAATGTTTTCCTTG TTGCCTTTGGGAACCATCAATCTCCTGTGTTTACTCCAGAGCAATTGGTGGAGAAATACAGCAACATTACATTTCTTTTCTACCTTGTGATTTTAATCGT AATCGTTGCCCTGCATCAATACATATACAGGAGAGGAGAACAGCTGGTGGCTGTCTCAGGACAAGACCTTCAACCACACTGGCAAATGTTACTTCCGTTC TCTTATGCTTTAGTTTCAGGTGCAGTTGGATCGTGCTCTGTGTTGTTTGCAAAATCTCTGTCTAATCTGCTAAGATTGGCAATGTCTAGCAGCTATCAGT TGCACAGTTGGTTCACATACTCTATGCTTCTTCTATTTCTCAGTACTGCTGGATTTTGGATGACAAGGCTGAATGAAGGATTGGCACTATTTGATGCAAT TTTAATCGTTCCAATGTTTCAGATAGTGTGGACATTCTTCTCTATCTGTACAGGATTTGTTTACTTCCAGGAGTATCAGGTATTTGATGCTTTGAGAACA ACAATGTTCATATTAGGAATGATGTGCGTATTCACAGGCATTTCTTTGTTAGCTCCCGACGAGTCAAGAGGTGGTGAGGTGAAGGAACCTTCTGCTTTGG TTTCAGTTGTTTCTTCAAGCGAAACAGACAGGCTTGCATTCTTGGCAGAAGAGAGACAAAATAAGGAGAAACGGTCACCCATGCAGGGAATAGTAGTGAA GATGGCTGAGATAATGTCCAAAGCAAAGACTGCATGTTCTATGACGATTGGCCTTGGGGAGGATACGATTAATGCATCGGCAGTGCTGGTGATGCCAATG GTATCGTCGAAGATAACGGGTTTCAGAGGGAGCGTGTTTGACAGGCCGAAGGTATTCTCGTTGCGGAATGGAGGATGGAGTAAGATCTCAATGGATGAAG ATGGTGTGAAGGAAGTTGCAGACTCGCACCTGGAGCTTCCTCAAACACTCTGA
AA sequence Show only first row Show all	>Lus10012589 pacid=23143841 polypeptide=Lus10012589 locus=Lus10012589.g ID=Lus10012589.BGIv1.0 annot-version=v1.0 MGEWIVGAVINLFGSIAINFGTNLLKVGHNELTLENHLKRERRSLMDSEGIGGKVPLKSVIHFQSWRVGIVFFFLGNCLNFVSFGYAAQSLLAALGSVQF VSNIAFAYFVFNKMVTVKVLVATAFIVLGNVFLVAFGNHQSPVFTPEQLVEKYSNITFLFYLVILIVIVALHQYIYRRGEQLVAVSGQDLQPHWQMLLPF SYALVSGAVGSCSVLFAKSLSNLLRLAMSSSYQLHSWFTYSMLLLFLSTAGFWMTRLNEGLALFDAILIVPMFQIVWTFFSICTGFVYFQEYQVFDALRT TMFILGMMCVFTGISLLAPDESRGGEVKEPSALVSVVSSSETDRLAFLAEERQNKEKRSPMQGIVVKMAEIMSKAKTACSMTIGLGEDTINASAVLVMPM VSSKITGFRGSVFDRPKVFSLRNGGWSKISMDEDGVKEVADSHLELPQTL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26670			Protein of unknown function (D...		Lus10012589 [exp]	0	1
AT3G60450			Phosphoglycerate mutase family...		Lus10009779 [exp]	3.0	0.8352
AT3G45640		ATMAPK3, ATMPK3	mitogen-activated protein kina...		Lus10036136 [exp]	8.7	0.8145
AT4G26190			Haloacid dehalogenase-like hyd...		Lus10032890 [exp]	9.2	0.7963
AT4G33780			unknown protein		Lus10035665 [exp]	13.2	0.8066
AT1G42990	bZIP	AtBZIP60	Bbasic region/leucine zipper m...		Lus10021534 [exp]	15.7	0.7730
AT1G11410			S-locus lectin protein kinase ...		Lus10005053 [exp]	15.9	0.7648
AT1G53050			Protein kinase superfamily pro...		Lus10039836 [exp]	16.7	0.7610
AT4G24160			alpha/beta-Hydrolases superfam...		Lus10024310 [exp]	16.9	0.7800
AT5G17680			disease resistance protein (TI...		Lus10011104 [exp]	17.3	0.7702
AT1G77480			Eukaryotic aspartyl protease f...		Lus10025687 [exp]	20.8	0.7747

Compare expression of checked genes

Lus10012589 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.