Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12930 1125 / 0 ARM repeat superfamily protein (.1) AT5G62600 127 / 1e-29 MOS14 modifier of snc1-1, 14, ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041503 [exp] 951 / 0 AT1G12930 558 / 0.0 ARM repeat superfamily protein (.1) Lus10004250 [exp] 124 / 9e-29 AT5G62600 1296 / 0.0 modifier of snc1-1, 14, ARM repeat superfamily protein (.1) Lus10042159 [exp] 83 / 8e-16 AT5G62600 1352 / 0.0 modifier of snc1-1, 14, ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G141100 [exp] 1394 / 0 AT1G12930 1258 / 0.0 ARM repeat superfamily protein (.1) Potri.015G068600 [exp] 130 / 2e-30 AT5G62600 1454 / 0.0 modifier of snc1-1, 14, ARM repeat superfamily protein (.1) Potri.012G073600 [exp] 117 / 1e-26 AT5G62600 1450 / 0.0 modifier of snc1-1, 14, ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF08389 [flax] [poplar] Xpo1 Exportin 1-like protein
Representative CDS sequence Show only first row Show all	>Lus10012590 pacid=23143883 polypeptide=Lus10012590 locus=Lus10012590.g ID=Lus10012590.BGIv1.0 annot-version=v1.0 ATGGAGCTGCAAATCAAAGTAGCCCAGGCTGTTCAAGTCCTCAATCACGACGCCCAGTCCTGTAACCGCGTCGCTGCTAATCAGTGGCTTGTTCAATTTC AGCAGACCGACTCTGCTTGGGAGGTCGCCACTTCCATCCTCACCTCCGATCATCTCCCTTCTCTCCTCTCTAATTCTGAACTCCAGTTCTTTGCCGCCCA GATTCTCAAACGCAAGATCCGAAGTGAAGGACGTTACCTGCAGTCTGGACCAAAACATTCTTTGCTGAATGCTTTGCTTTTCGCTGCTAAGAGATTTAGC TCTGGTCCTCCCCAGCTTTTGACACAAATATGTCTTGCGCTTGCTTCCCTTATGCTTACTGCTGTGGACGATCAAAAACCTATCGAGCAGCTATTTTACA GTCTACAGACGCTGCAGAACAATGATGATGGTAATGTTGCGCTCTTGGAGATGCTCACTGTTCTTCCAGAAGAAGTTGTTGATGCCCAAAACTCTGATAG TAGTGTAAGCTCCTTTCGTAGAAGGCAATGTGGCCAAGAGCTTCTTTCACATACTCCTATGGTGCTGGAGTTTTTGTTGGAGCAATCTCAGAAGAAGTAT GATGCTGTTGTTCAACTGCATGAGAGGGATAGGAAAGTTCTTCGTTGCCTACTTAGTTGGGTCCGAGCTGGAGGCTTCTCAGATATTTCTCGGGACTCAT TGCCGACACATCCACTTCTAAATTTTGTATTTAACTCTTTGCAGGGACTGCAACAGATTCTGCTGTACAGGATACAATTTCTCAAGGAGGTGCTTCTTCT TTCTGCTATTAATAACAGGGATGAGAAAGTCATCAGTGGCCTCGCATGCCTAATGTCAGAAATTGGACAGGCGGCACTATCTCTCATTGTTGAGGCAAGT ACCGAGGCTCTAGCATTGACAGATACAATGTTGAGCTGTCTGGCATATCCAAGTGAAGACTGGGAGATCGCAGACTCAACATTGCAATTCTGGTCTAGCC TTGTGAGCTATGTACTCGGCCTTGAGTCCAATGGTACTCTAGACAAGAAACATGTTGAAGCCATTTTCTCTTCCATCTTCTTGGCACTGGTTGATGCTCT TATACTGCGAGCCCAGGTTGATGAATCCACATTTAATGAGCGGAGTGGTGTTCTTGAACTACCTGATGGTCTCATCAATTTCAGGATGAATCTTGTTGAA CTACTGGTGGACATATGTCAGCTCTTAAGACCTACCAGGTTTTTACAGAAGGTCCTTTTTGGTGGCTGGGCGCCGGTAAATACACCAGTACCTTGGAAAG AGGTGGAAACTAAACTTTTTGTTCTTAATGTGGTTTCTGAAGTAGTCTTGCAGGAGAGCCAGATGTTTGACATCTCTTGCATCATGCAATTAGTAACGAT GTTATCGACTTGGCCTTCGGATGAGCTCAGTGGGTTCATGAACGTGGTACGCAGAGCTCTTGCAGACGTTGTCGGCTCCTATTCAAAGTGGATAGCGACA TCACAAGCTAATTCTAGACCTATGCTATTATTCCTTGCTGCAGGGATTTCGGAGAATCATTCCTCGACTGCTTGTGCCTCTGCCCTGCGTAAATTTTGTG AAGAATGTTCAGCTGCAATTTATGATCCAGCAAATTTGGAAATACTATTATGGATAGGAGAGGCATTGGAGAAGAGACATTTACCTTTAGATGAAGAAGA AGAAGTAATAAGTGCAGTCAGCACAATCCTTAGTTCTATACCAAATGAAGAACTAAAGTGCAACTTGTTGGCTAGATTGCTTTCATCGAGCTATGAAGCC TTAGGAAAGCTTATTAATGAAGACGGAGATCATTCTCACAGACAAAATCCAGCTACTTATATTCAGCTTTTGAACAATGCCGCCAGAGGATTACATAGAA TAGGAACTGTATTTGCTCAACTTGCAATGTCGAAACCGAATGAGCAAGCTACAGATGACCCTTTCTTGGGTTTGCTGAGGGTGTTTTGGCCTCTGTTAGA GAAACTTCTCAGATCTGAATTCATGGAAAACAGCAACTTGTCTTCTGCAGCTTGTCGGGCGCTCTCTCTGGCAATTCAGTCTTCTGGGGAGCACTTTCTA GTTTTACTTCCAAGCGTGCTCGATTGCTTGTCAACAAATTTTCTCTCATTCCAAAATCATGAATGTTACATTAAAACGGCTTCCATTGTTGTCGAAGAAT TCAACCATGTGGAGGAATATGGTCCTCTGTTTGTCAAAACATTTGAAAGATTTTCCCAAGCAGCATCAGTTATGGGTCTGAATTCTTCATATATATGTGA CCAAGAGCCTGATTTGGTGGAAGCTTATGCAAATTTTGCATCCACATTTGTCCGAAACTGTCCTAAGCAAGTTTTAGCTCAATCTGGCCCACTCCTGGAA ATTTCGTTCCAAAAGGCTGCCATATGTTGCACAGCCATGCACCGGGGAGCAGCTTTAGCTGCGATCTCATATTTATCATGTTTCTTGGAGGTGACCCTTG CCTTTCTGCTGGAGCCAATTAACTCAATTCCCGAGGAATCATTTAATTGCATCACACTTCAGCTCCTATCTCGTAGTGGTGAAGGGCTAGTATCAAATAT CGTGTATGCTTTGCTTGGTGTTTCAGCAATGTCTCGTGTTCACAAGTGTGCAACAGTGTTGCAACAGTTGGCTGCAATTTGCAGGTTCTGTGATGGAACA ATTTGGAATTCGATGCTCCGTTGGGACTCATTGCAAGGATGGCTACAAGCTGCGGTGCAAGCTCTACCGGTGGAATATCTAAAGGCAGGAGAAGATGATA CATTGGTTCCGGTTTGGGTGGAGGCCCTCTCTGGGGCTGCAACCGGATATCTGGAAAGCAAGAGCATCTGCGATGGTGGTAATAACAGTTATGCGCATAT GCAAGGGAAAGGGGGAAGAGTCCTCAAGCGTATTATTCGAGAATTTGCCGACAGTCACCGATGTTCCCTACCCCAAATCTGA
AA sequence Show only first row Show all	>Lus10012590 pacid=23143883 polypeptide=Lus10012590 locus=Lus10012590.g ID=Lus10012590.BGIv1.0 annot-version=v1.0 MELQIKVAQAVQVLNHDAQSCNRVAANQWLVQFQQTDSAWEVATSILTSDHLPSLLSNSELQFFAAQILKRKIRSEGRYLQSGPKHSLLNALLFAAKRFS SGPPQLLTQICLALASLMLTAVDDQKPIEQLFYSLQTLQNNDDGNVALLEMLTVLPEEVVDAQNSDSSVSSFRRRQCGQELLSHTPMVLEFLLEQSQKKY DAVVQLHERDRKVLRCLLSWVRAGGFSDISRDSLPTHPLLNFVFNSLQGLQQILLYRIQFLKEVLLLSAINNRDEKVISGLACLMSEIGQAALSLIVEAS TEALALTDTMLSCLAYPSEDWEIADSTLQFWSSLVSYVLGLESNGTLDKKHVEAIFSSIFLALVDALILRAQVDESTFNERSGVLELPDGLINFRMNLVE LLVDICQLLRPTRFLQKVLFGGWAPVNTPVPWKEVETKLFVLNVVSEVVLQESQMFDISCIMQLVTMLSTWPSDELSGFMNVVRRALADVVGSYSKWIAT SQANSRPMLLFLAAGISENHSSTACASALRKFCEECSAAIYDPANLEILLWIGEALEKRHLPLDEEEEVISAVSTILSSIPNEELKCNLLARLLSSSYEA LGKLINEDGDHSHRQNPATYIQLLNNAARGLHRIGTVFAQLAMSKPNEQATDDPFLGLLRVFWPLLEKLLRSEFMENSNLSSAACRALSLAIQSSGEHFL VLLPSVLDCLSTNFLSFQNHECYIKTASIVVEEFNHVEEYGPLFVKTFERFSQAASVMGLNSSYICDQEPDLVEAYANFASTFVRNCPKQVLAQSGPLLE ISFQKAAICCTAMHRGAALAAISYLSCFLEVTLAFLLEPINSIPEESFNCITLQLLSRSGEGLVSNIVYALLGVSAMSRVHKCATVLQQLAAICRFCDGT IWNSMLRWDSLQGWLQAAVQALPVEYLKAGEDDTLVPVWVEALSGAATGYLESKSICDGGNNSYAHMQGKGGRVLKRIIREFADSHRCSLPQI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12930			ARM repeat superfamily protein...		Lus10012590 [exp]	0	1
AT4G10730			Protein kinase superfamily pro...		Lus10001677 [exp]	2.8	0.8031
AT2G25170		CKH2, SSL2, GYM...	SUPPRESSOR OF SLR 2, GYMNOS, C...		Lus10041019 [exp]	3.3	0.8468
AT4G32551		RON2, LUG	ROTUNDA 2, LEUNIG, LisH dimeri...		Lus10033066 [exp]	4.0	0.8223
AT4G27910		SDG16, ATX4	SET domain protein 16 (.1)		Lus10005007 [exp]	6.2	0.8287
AT2G25170		CKH2, SSL2, GYM...	SUPPRESSOR OF SLR 2, GYMNOS, C...		Lus10005339 [exp]	6.3	0.8365
AT3G21290			dentin sialophosphoprotein-rel...		Lus10006871 [exp]	6.9	0.8042
AT1G04010		ATPSAT1	phospholipid sterol acyl trans...		Lus10008234 [exp]	8.4	0.7856
AT1G79870			D-isomer specific 2-hydroxyaci...		Lus10035867 [exp]	9.4	0.7395
AT4G21300			Tetratricopeptide repeat (TPR)...		Lus10008967 [exp]	9.5	0.8035
AT1G73875			DNAse I-like superfamily prote...		Lus10032490 [exp]	10.0	0.8106

Compare expression of checked genes

Lus10012590 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.