Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12900 612 / 0 GAPA-2 glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (.1.2.3.4) AT3G26650 602 / 0 GAPA-1, GAPA GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 1, glyceraldehyde 3-phosphate dehydrogenase A subunit (.1) AT1G42970 483 / 2e-169 GAPB glyceraldehyde-3-phosphate dehydrogenase B subunit (.1) AT1G79530 270 / 4e-86 GAPCP-1 glyceraldehyde-3-phosphate dehydrogenase of plastid 1 (.1) AT1G16300 261 / 5e-83 GAPCP-2 glyceraldehyde-3-phosphate dehydrogenase of plastid 2 (.1) AT1G13440 252 / 2e-80 GAPC2, GAPC-2 GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C-2, glyceraldehyde-3-phosphate dehydrogenase C2 (.1.2) AT3G04120 251 / 5e-80 GAPC1, GAPC-1, GAPC glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041502 [exp] 735 / 0 AT1G12900 650 / 0.0 glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (.1.2.3.4) Lus10016033 [exp] 484 / 6e-170 AT1G42970 758 / 0.0 glyceraldehyde-3-phosphate dehydrogenase B subunit (.1) Lus10012243 [exp] 484 / 8e-170 AT1G42970 759 / 0.0 glyceraldehyde-3-phosphate dehydrogenase B subunit (.1) Lus10006435 [exp] 260 / 1e-83 AT3G04120 593 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Lus10011375 [exp] 260 / 1e-83 AT3G04120 593 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Lus10015826 [exp] 259 / 3e-83 AT3G04120 606 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Lus10009602 [exp] 258 / 1e-81 AT1G16300 694 / 0.0 glyceraldehyde-3-phosphate dehydrogenase of plastid 2 (.1) Lus10000872 [exp] 257 / 2e-81 AT1G16300 694 / 0.0 glyceraldehyde-3-phosphate dehydrogenase of plastid 2 (.1) Lus10014603 [exp] 251 / 6e-80 AT3G04120 634 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G140500 [exp] 636 / 0 AT3G26650 622 / 0.0 GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 1, glyceraldehyde 3-phosphate dehydrogenase A subunit (.1) Potri.002G220566 [exp] 618 / 0 AT3G26650 614 / 0.0 GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 1, glyceraldehyde 3-phosphate dehydrogenase A subunit (.1) Potri.005G254100 [exp] 480 / 6e-168 AT1G42970 732 / 0.0 glyceraldehyde-3-phosphate dehydrogenase B subunit (.1) Potri.002G007100 [exp] 477 / 2e-167 AT1G42970 690 / 0.0 glyceraldehyde-3-phosphate dehydrogenase B subunit (.1) Potri.010G172400 [exp] 264 / 8e-84 AT1G16300 618 / 0.0 glyceraldehyde-3-phosphate dehydrogenase of plastid 2 (.1) Potri.015G091400 [exp] 258 / 7e-83 AT1G13440 578 / 0.0 GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C-2, glyceraldehyde-3-phosphate dehydrogenase C2 (.1.2) Potri.012G094100 [exp] 258 / 1e-82 AT1G13440 580 / 0.0 GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C-2, glyceraldehyde-3-phosphate dehydrogenase C2 (.1.2) Potri.008G083900 [exp] 259 / 5e-82 AT1G16300 634 / 0.0 glyceraldehyde-3-phosphate dehydrogenase of plastid 2 (.1) Potri.010G055400 [exp] 253 / 6e-81 AT3G04120 592 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1) Potri.001G335800 [exp] 253 / 1e-80 AT3G04120 585 / 0.0 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00044 [flax] [poplar] Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CL0139 [flax] [poplar] GADPH_aa-bio_dh PF02800 [flax] [poplar] Gp_dh_C Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10012591 pacid=23143832 polypeptide=Lus10012591 locus=Lus10012591.g ID=Lus10012591.BGIv1.0 annot-version=v1.0 ATGGTGATGGTAATGGTGATGATGATAATGGTATTTTCTACAGCAACGACAACAGCAAACACTTCGAGATCTACTTGTGCCATTCATAGTGCTGCTCCTT CAATCTCCACAACTGTTATTCGCCCTATAATAATGGCTTCGGCTACTTTCGCTGTAGCCAAACCATCTCTTCGGGGAAACGGGAAGGGAGTGGCAGAACT CTCAAGCCTCCGCGGCTCACCATTCGGCAGGAAAACTTCCTCCGATGACTTTATGTCAGCCCTTTCTTACCACTACCAGACCTCTGCTGTTAGAAACAGC GGGAGCGGGGGATACAGGAGATTGGTGACGGAGGCGAAGCTGAAAGTGGCGATAAATGGGTTCGGAAGAATCGGGAGGAACTTCTTGAGGTGCTGGCACG GCAGGAAAGACTCCCCACTTGAACTCATTGCCATCAACGACACCGGTGGCGTCAAGCAGGCTTCTCACCTCCTTAAGTACGATTCCACCCTCGGTATCTT CGACGCCGATGTCAAGCCTGTCGGCGACAACGGCATCTCCGTCGACGGCAAAGTCATCAAGGTCGTCTCCAGCCGCAACCCCCTCGACCTCCCGTGGAAG GAGTTGGAGATAGACCTTGTGATAGAAGGTACAGGAGTATTCGTGGACAGAGAAGGAGCAGGCAAACACATCACCGCCGGAGCCAAGAAGGTGCTCATCA CTGCACCGGGCAAGGGCGACATCCCTACCTACGTTGTCGGAGTCAACGCAGACGGTTACACCCACGCTGACACGATCATCAGCAACGCATCCTGCACGAC AAACTGTCTGGCCCCCTTTGTCAAGGTCCTCGACCAGAAATTTGGCATCATTAAGGGAACCATGACCACCACCCACTCCTACACCGGTGACCAGCGTCTC CTTGACGCCAGCCACAGGGATCTCAGGCGTGCGAGGGCTGCTGCCCTCAACATCGTCCCTACGTCCACTGGAGCAGCCAAGGCCGTGGCCCTGGTGCTCC CTTCCTTGAAGGGCAAGCTCAACGGCATTGCCCTCCGTGTCCCCACCCCCAATGTCTCGGTGGTTGACCTCGTGGTGCAAGTGTCGAAGAAGACGTTTGC GGAGGAGGTGAACGCTGCGTTCAGGGAGAGCGCGGACAACGAGCTCAAGGGGATATTGTCGGTGTGCGATGAGCCGCTCGTGTCGGTGGATTTCAGGTGC ACGGATGTGTCTTCGACGGTGGATTCGTCTTTGACGATGGTGATGGGGGATGACATGGTGAAGGTGATTGCATGGTATGATAACGAGTGGGGGTACTCGC AGAGGGTGGTTGACCTTGCTGACATTGTTGCCAACAACTGGGAGTAA
AA sequence Show only first row Show all	>Lus10012591 pacid=23143832 polypeptide=Lus10012591 locus=Lus10012591.g ID=Lus10012591.BGIv1.0 annot-version=v1.0 MVMVMVMMIMVFSTATTTANTSRSTCAIHSAAPSISTTVIRPIIMASATFAVAKPSLRGNGKGVAELSSLRGSPFGRKTSSDDFMSALSYHYQTSAVRNS GSGGYRRLVTEAKLKVAINGFGRIGRNFLRCWHGRKDSPLELIAINDTGGVKQASHLLKYDSTLGIFDADVKPVGDNGISVDGKVIKVVSSRNPLDLPWK ELEIDLVIEGTGVFVDREGAGKHITAGAKKVLITAPGKGDIPTYVVGVNADGYTHADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRL LDASHRDLRRARAAALNIVPTSTGAAKAVALVLPSLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRC TDVSSTVDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12900		GAPA-2	glyceraldehyde 3-phosphate deh...		Lus10012591 [exp]	0	1
AT5G38410			Ribulose bisphosphate carboxyl...		Lus10033558 [exp]	1.4	0.9721
AT1G12900		GAPA-2	glyceraldehyde 3-phosphate deh...		Lus10041502 [exp]	1.7	0.9592
AT2G39730		RCA	rubisco activase (.1.2.3)		Lus10002710 [exp]	2.2	0.9525
AT3G12780		PGK1	phosphoglycerate kinase 1 (.1)		Lus10031744 [exp]	2.4	0.9603
AT3G12780		PGK1	phosphoglycerate kinase 1 (.1)		Lus10031168 [exp]	3.5	0.9537
AT3G60750			Transketolase (.1.2)		Lus10031708 [exp]	5.5	0.9430
AT5G38420			Ribulose bisphosphate carboxyl...		Lus10009172 [exp]	5.9	0.9493
AT1G20340		PETE2, DRT112	PLASTOCYANIN 2, DNA-DAMAGE-REP...		Lus10004155 [exp]	6.0	0.9408
AT5G38410			Ribulose bisphosphate carboxyl...		Lus10017597 [exp]	6.5	0.9503
AT5G13650		SVR3	SUPPRESSOR OF VARIEGATION 3, e...		Lus10007535 [exp]	6.6	0.9256

Compare expression of checked genes

Lus10012591 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.