Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54900 156 / 2e-48 ATGRXCP, CXIP1 GLUTAREDOXIN, CAX interacting protein 1 (.1) AT2G38270 103 / 2e-26 ATGRX2, CXIP2 GLUTAREDOXIN, CAX-interacting protein 2 (.1) AT4G04950 100 / 9e-25 AtGRXS17 Arabidopsis thaliana monothiol glutaredoxin 17, thioredoxin family protein (.1) AT3G15660 94 / 4e-24 ATGRX4 A. THALIANA GLUTAREDOXIN 4, glutaredoxin 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041501 [exp] 368 / 3e-131 AT3G54900 159 / 4e-49 GLUTAREDOXIN, CAX interacting protein 1 (.1) Lus10002847 [exp] 101 / 9e-26 AT2G38270 384 / 4e-135 GLUTAREDOXIN, CAX-interacting protein 2 (.1) Lus10018487 [exp] 97 / 5e-25 AT4G04950 280 / 5e-93 Arabidopsis thaliana monothiol glutaredoxin 17, thioredoxin family protein (.1) Lus10011187 [exp] 94 / 1e-23 AT4G04950 322 / 8e-110 Arabidopsis thaliana monothiol glutaredoxin 17, thioredoxin family protein (.1) Lus10008687 [exp] 94 / 1e-22 AT3G15660 197 / 7e-62 A. THALIANA GLUTAREDOXIN 4, glutaredoxin 4 (.1.2) Lus10011188 [exp] 62 / 1e-11 AT4G04950 297 / 1e-99 Arabidopsis thaliana monothiol glutaredoxin 17, thioredoxin family protein (.1) Lus10026132 [exp] 41 / 0.0006 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G141200 [exp] 182 / 2e-58 AT3G54900 197 / 5e-65 GLUTAREDOXIN, CAX interacting protein 1 (.1) Potri.003G060600 [exp] 98 / 1e-25 AT3G15660 201 / 7e-67 A. THALIANA GLUTAREDOXIN 4, glutaredoxin 4 (.1.2) Potri.004G042200 [exp] 103 / 2e-25 AT4G04950 750 / 0.0 Arabidopsis thaliana monothiol glutaredoxin 17, thioredoxin family protein (.1) Potri.016G119200 [exp] 100 / 3e-25 AT2G38270 393 / 2e-138 GLUTAREDOXIN, CAX-interacting protein 2 (.1) Potri.011G051400 [exp] 100 / 3e-24 AT4G04950 680 / 0.0 Arabidopsis thaliana monothiol glutaredoxin 17, thioredoxin family protein (.1) Potri.018G133400 [exp] 39 / 0.0007 AT5G20500 182 / 2e-60 Glutaredoxin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00462 [flax] [poplar] Glutaredoxin Glutaredoxin
Representative CDS sequence Show only first row Show all	>Lus10012592 pacid=23143824 polypeptide=Lus10012592 locus=Lus10012592.g ID=Lus10012592.BGIv1.0 annot-version=v1.0 ATGAACGGGCAGAATATATTTTTCCGCCGGCGAGGACCTGCTTCCTTGCAAGGAATCCACGAGCTCACTAACTACTCAAAACATCCAACACCTTTCATTC TACTTTGGACAGCTGATAAACTTAAACCACCAATAATAATGGCTTCTCAAACTGTTTTCTCTTCTCCATCCACGGCGGCGATTGTTCGACCACCGTTGAC TCCCTCGTCGTCCTTCTCCTTAGCTCAAGCTTCCATTCCCTCCGCATCTAAATTTTCCTCTCAATTCCCGCGAACCCTACGAACCAATTCGCTATTTGTT CATAAGCGTTTACCGGGAGCCAAGAAGACCACCCTCCCTGCCATCAGATGTGCGTTGTCGTCGGAGCTGAAAACAACGATAGATAAAGTAGTTACATCGC AGAAAGTCCTTCTCTTTATGAAGGGAACCAAAGATTTCCCTCAGTGTGGATTCTCAAACACTGTGGTGCAGATACTGAATGCTTGCAACGTCCCTTTTGA AACCATCAACATACTAGAGAATGAACTTCTTCGTCAAGGGTTGAAAGAGTACTCCAGTTGGCCAACTTTCCCTCAGCTATATATCGACGGTGAATTTTTT GGTGGCTGTGATATTACCGTTGGTAAGTAA
AA sequence Show only first row Show all	>Lus10012592 pacid=23143824 polypeptide=Lus10012592 locus=Lus10012592.g ID=Lus10012592.BGIv1.0 annot-version=v1.0 MNGQNIFFRRRGPASLQGIHELTNYSKHPTPFILLWTADKLKPPIIMASQTVFSSPSTAAIVRPPLTPSSSFSLAQASIPSASKFSSQFPRTLRTNSLFV HKRLPGAKKTTLPAIRCALSSELKTTIDKVVTSQKVLLFMKGTKDFPQCGFSNTVVQILNACNVPFETINILENELLRQGLKEYSSWPTFPQLYIDGEFF GGCDITVGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54900		ATGRXCP, CXIP1	GLUTAREDOXIN, CAX interacting ...		Lus10012592 [exp]	0	1
AT2G43950		OEP37, ATOEP37	ARABIDOPSIS CHLOROPLAST OUTER ...		Lus10013621 [exp]	1.4	0.7685
AT2G17240			unknown protein		Lus10043214 [exp]	8.9	0.7207
AT4G28706			pfkB-like carbohydrate kinase ...		Lus10011270 [exp]	11.2	0.7649
AT3G11570		TBL8	TRICHOME BIREFRINGENCE-LIKE 8 ...		Lus10017004 [exp]	12.8	0.7249
AT5G02510			unknown protein		Lus10024410 [exp]	13.0	0.7196
AT4G19150			Ankyrin repeat family protein ...		Lus10001048 [exp]	15.9	0.7343
AT1G06050			Protein of unknown function (D...		Lus10008154 [exp]	19.6	0.6908
AT4G12480		PEARLI 1 1, PEA...	EARLY ARABIDOPSIS ALUMINUM IND...		Lus10036494 [exp]	21.0	0.6960
AT3G48890		MSBP2, ATMP2, A...	MEMBRANE STEROID BINDING PROTE...		Lus10038868 [exp]	25.5	0.6716
AT5G52200		AtI-2	inhibitor-2, phosphoprotein ph...		Lus10005751 [exp]	31.3	0.7198

Compare expression of checked genes

Lus10012592 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.