Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12910 458 / 2e-164 LWD1, ATAN11 LIGHT-REGULATED WD 1, ANTHOCYANIN11, Transducin/WD40 repeat-like superfamily protein (.1) AT3G26640 434 / 7e-155 LWD2 LIGHT-REGULATED WD 2, Transducin/WD40 repeat-like superfamily protein (.1) AT5G24520 348 / 4e-121 ATTTG1, URM23, TTG1 UNARMED 23, TRANSPARENT TESTA GLABRA 1, Transducin/WD40 repeat-like superfamily protein (.1.2.3) AT1G29260 54 / 2e-08 PEX7, ATPEX7 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) AT4G35050 52 / 1e-07 NFC3, MSI3 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) AT2G16780 52 / 2e-07 MSI02, NFC2, NFC02, MSI2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) AT1G18830 50 / 7e-07 Transducin/WD40 repeat-like superfamily protein (.1) AT2G19540 48 / 4e-06 Transducin family protein / WD-40 repeat family protein (.1) AT4G35370 46 / 1e-05 Transducin/WD40 repeat-like superfamily protein (.1) AT3G15354 43 / 0.0002 SPA3 SPA1-related 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041500 [exp] 495 / 7e-179 AT1G12910 641 / 0.0 LIGHT-REGULATED WD 1, ANTHOCYANIN11, Transducin/WD40 repeat-like superfamily protein (.1) Lus10023228 [exp] 313 / 4e-107 AT5G24520 505 / 0.0 UNARMED 23, TRANSPARENT TESTA GLABRA 1, Transducin/WD40 repeat-like superfamily protein (.1.2.3) Lus10007274 [exp] 56 / 6e-09 AT1G29260 529 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Lus10029221 [exp] 56 / 8e-09 AT1G29260 531 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Lus10027848 [exp] 51 / 4e-07 AT4G35050 585 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10005074 [exp] 49 / 1e-06 AT4G35050 590 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10020888 [exp] 42 / 0.0003 AT5G64630 563 / 0.0 FASCIATA 2, Transducin/WD40 repeat-like superfamily protein (.1.2.3) Lus10033489 [exp] 42 / 0.0003 AT5G64630 612 / 0.0 FASCIATA 2, Transducin/WD40 repeat-like superfamily protein (.1.2.3) Lus10025341 [exp] 42 / 0.0003 AT2G19540 668 / 0.0 Transducin family protein / WD-40 repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G220500 [exp] 469 / 1e-168 AT1G12910 679 / 0.0 LIGHT-REGULATED WD 1, ANTHOCYANIN11, Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G140700 [exp] 468 / 4e-168 AT1G12910 677 / 0.0 LIGHT-REGULATED WD 1, ANTHOCYANIN11, Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G002600 [exp] 343 / 5e-119 AT5G24520 565 / 0.0 UNARMED 23, TRANSPARENT TESTA GLABRA 1, Transducin/WD40 repeat-like superfamily protein (.1.2.3) Potri.012G006100 [exp] 338 / 5e-117 AT5G24520 577 / 0.0 UNARMED 23, TRANSPARENT TESTA GLABRA 1, Transducin/WD40 repeat-like superfamily protein (.1.2.3) Potri.006G209000 [exp] 301 / 2e-102 AT1G12910 391 / 3e-136 LIGHT-REGULATED WD 1, ANTHOCYANIN11, Transducin/WD40 repeat-like superfamily protein (.1) Potri.016G075800 [exp] 275 / 2e-92 AT1G12910 345 / 2e-118 LIGHT-REGULATED WD 1, ANTHOCYANIN11, Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G066600 [exp] 54 / 1e-08 AT1G29260 379 / 3e-134 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Potri.005G074400 [exp] 53 / 8e-08 AT2G19540 631 / 0.0 Transducin family protein / WD-40 repeat family protein (.1) Potri.009G135100 [exp] 50 / 4e-07 AT2G16780 612 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) Potri.007G094000 [exp] 50 / 7e-07 AT2G19540 623 / 0.0 Transducin family protein / WD-40 repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10012593 pacid=23143884 polypeptide=Lus10012593 locus=Lus10012593.g ID=Lus10012593.BGIv1.0 annot-version=v1.0 ATGTTCATCCCGGACAAGGACTCCCAGAAGCCCGACCTCCTCGCCACTTCCAGCGACTTCCTCCGCCTCTGGCTCATCTCCGAAGACCGCGTCGAGCTCA AGAGCCTCCTCAACGGCAACAAGAACAGCGAGTTCTGCGGCCCTCTCACCTCCTTTGACTGGAACGACGCCGATCCTAAACGAATCGGTACCTCTAGCAT CGACACCACCTGTACGATTTGGGACATCGAGCGGGAGGCCGTCGATACTCAGCTAATCGCTCATGATAAGGAGGTCTACGACATCGCTTGGGGCGGAGTT GGAGTTTTCGCCTCTGTATCGGCTGATGGCTCGGTTAGGGTTTTTGATTTGAGGGATAAGGAGCATTCCACTATCATCTATGAGAGCTCTGAGCCTGATA CTCCTTTGGTCCGCCTTGGATGGAACAAGCAGGACCCTAGGTATATGGCGACTATCATAATGGACAGTGCTAAAGTGGTTGTTCTTGATATCCGCTTCCC TACGCTTCCTGTACTCTTGTCACATTTCATTGCTTGGGCGCCTCATAGCTCTTGTCACATTTGCACTGCTGGAGACGATTCTCAGGCCTTGATTTGGGAT CTCTCTTCCATGGGACAGCCTGTTGACGGAGGGCTTGATCCAATTCTTGCTTACACTGCTGGTGCTGAAATTGAGCAACTTCAGTGGTCAGCTTCCCAGC CTGATTGGGTTGCCATTGCCTTCTCTACTAAGCTCCAGATTCTCAGGGTCTGA
AA sequence Show only first row Show all	>Lus10012593 pacid=23143884 polypeptide=Lus10012593 locus=Lus10012593.g ID=Lus10012593.BGIv1.0 annot-version=v1.0 MFIPDKDSQKPDLLATSSDFLRLWLISEDRVELKSLLNGNKNSEFCGPLTSFDWNDADPKRIGTSSIDTTCTIWDIEREAVDTQLIAHDKEVYDIAWGGV GVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVLLSHFIAWAPHSSCHICTAGDDSQALIWD LSSMGQPVDGGLDPILAYTAGAEIEQLQWSASQPDWVAIAFSTKLQILRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12910		LWD1, ATAN11	LIGHT-REGULATED WD 1, ANTHOCYA...		Lus10012593 [exp]	0	1
AT3G19910			RING/U-box superfamily protein...		Lus10017385 [exp]	2.8	0.9074
AT4G36740	HD	HB-5, ATHB40	homeobox protein 40 (.1)		Lus10041719 [exp]	4.9	0.9202
AT1G21770			Acyl-CoA N-acyltransferases (N...		Lus10025670 [exp]	7.5	0.9090
AT3G06240			F-box family protein (.1)		Lus10001105 [exp]	9.8	0.9194
AT1G04850			ubiquitin-associated (UBA)/TS-...		Lus10017103 [exp]	10.1	0.9105
AT4G21580			oxidoreductase, zinc-binding d...		Lus10011233 [exp]	11.8	0.9014
AT5G61510			GroES-like zinc-binding alcoho...		Lus10009658 [exp]	12.2	0.9127
AT4G16330			2-oxoglutarate (2OG) and Fe(II...		Lus10037292 [exp]	12.8	0.9048
AT5G27600		LACS7, ATLACS7	long-chain acyl-CoA synthetase...		Lus10029918 [exp]	14.1	0.9129
					Lus10018472 [exp]	14.7	0.8896

Compare expression of checked genes

Lus10012593 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.