Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36880 1244 / 0 ACS acetyl-CoA synthetase (.1.2) AT5G23050 154 / 1e-38 AAE17 acyl-activating enzyme 17 (.1) AT5G38120 144 / 3e-36 4CL8 AMP-dependent synthetase and ligase family protein (.1) AT4G05160 138 / 4e-34 AMP-dependent synthetase and ligase family protein (.1) AT1G20500 137 / 6e-34 AMP-dependent synthetase and ligase family protein (.1) AT1G55320 136 / 7e-33 AAE18 acyl-activating enzyme 18 (.1.2) AT1G20480 129 / 3e-31 AMP-dependent synthetase and ligase family protein (.1) AT3G48990 126 / 3e-30 AMP-dependent synthetase and ligase family protein (.1) AT1G20510 126 / 3e-30 OPCL1 OPC-8:0 CoA ligase1 (.1.2) AT3G16170 110 / 4e-25 AAE13 acyl activating enzyme 13, AMP-dependent synthetase and ligase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041499 [exp] 1466 / 0 AT5G36880 1241 / 0.0 acetyl-CoA synthetase (.1.2) Lus10038966 [exp] 163 / 1e-41 AT5G23050 1043 / 0.0 acyl-activating enzyme 17 (.1) Lus10027257 [exp] 159 / 5e-40 AT5G23050 1044 / 0.0 acyl-activating enzyme 17 (.1) Lus10013831 [exp] 149 / 9e-38 AT4G05160 654 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10036994 [exp] 147 / 6e-37 AT5G63380 516 / 4e-179 AMP-dependent synthetase and ligase family protein (.1) Lus10015998 [exp] 145 / 3e-36 AT1G20510 833 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10026544 [exp] 137 / 6e-34 AT4G05160 642 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10016135 [exp] 134 / 8e-33 AT4G05160 791 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10021431 [exp] 133 / 2e-32 AT4G05160 803 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G140900 [exp] 1274 / 0 AT5G36880 1191 / 0.0 acetyl-CoA synthetase (.1.2) Potri.015G056000 [exp] 149 / 3e-37 AT5G23050 1054 / 0.0 acyl-activating enzyme 17 (.1) Potri.017G112800 [exp] 139 / 2e-34 AT4G05160 852 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.004G102000 [exp] 137 / 7e-34 AT4G05160 826 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.005G248500 [exp] 135 / 5e-33 AT1G20510 795 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.002G012800 [exp] 134 / 5e-33 AT1G20510 769 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.017G033600 [exp] 127 / 2e-30 AT5G63380 598 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.015G144700 [exp] 125 / 6e-30 AT3G48990 776 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.001G006700 [exp] 125 / 1e-29 AT1G55320 1078 / 0.0 acyl-activating enzyme 18 (.1.2) Potri.001G006600 [exp] 124 / 3e-29 AT1G55320 1041 / 0.0 acyl-activating enzyme 18 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF00501 [flax] [poplar] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Lus10012595 pacid=23143894 polypeptide=Lus10012595 locus=Lus10012595.g ID=Lus10012595.BGIv1.0 annot-version=v1.0 ATGATGTCGTCTCCGTCATCGTCGTCGTATAGAGCCGGAGGAATTGAAGGAGTTAGCGTTGGATCCAGAACCCATCATCTTCTTCTTCATCTTCATGCAG CTTCTTCTCTTTCTTCTCCTTACTTATCTCTCCTCTCCCCCCCTTTGACTCCCCACATAAACTCCAAATTCAAATCATCACTGCGATCAGTCAAACCCCC AACTTCCGCCCTTCTCTCTCAACCCAAACTATCATTCACTACTCCTTCTGATCCTATGTCTTCCTTCCAAACCACCACCAATCACCTCCGCCATGTCGAG TCCATGAACCTTCTTCCCTCCGGCGCCGGCAAGATTCCTCGACTCAACGCCGTTATTTTAGGCGAGTCTCTTGCTTCCGAGGAGGACGATCTCGTCTTCC CTAGCGATCACTTCTCCCGTCAGGCCCTCGTTCCTTCCCCGCACAAGTACTTGGAAATGTATAAAAGGTCTGTGGAAGATCCTGCTGGATTTTGGTCTGA CATTGCTTCTCAATTCTTCTGGAAAACCAAGTGGGGAGATACTGTTTGCTCTGAGAACTTCGACGTCCGCTCTGGCAATGTCTTTATCCAGTGGTTTAAA GGTGGGATCACCAACATTTGCTACAACTGTGTCGATAGAAATGTAGAGTCTGGCAACGGGGATAAGATTGCTATGTACTGGGAAGGCAATGAGCGGGGTA CTCAGGACTCTCTTACCTACTCCCAGCTTCTTCACAAAGTTTGCCAGCTAGCCAACTACTTGAGAGATACAGGAGTCAAAAAGGGTGATGCAGTGGTCAT TTATCTACCCATGCTTATGGAACTTCCCATTGCTATGCTCGCGTGCGCTCGCATTGGTGCAGTTCACTCGGTTGTCTTTGCTGGGTTCTCTTCAGATTCT CTTGCTCAAAGAATCATGGATAGCAGACCAAAAGCTGTTATTACCTGCAATGCAGTCAAGAGAGGTTCCAAGGTTATCCAGCTCAAAGACATAGTTGATG CCGCCCTTACTGACTCTGCTAAAAATGGCTTCTCAGTGGGTGCTTGCTTAACTTATGAAAACGAGTCTGCAATGAAGAGGGAAAACACGAAATGGAAGGA GGGAAGAGACGTATGGTGGCAAGATGTTGTTCCAAAATACTCAACAAGTTGTGAGGTGGAATGGGTTGATGCAGAGGATCCCCTTTTCCTGTTGTACACT AGTGGGAGCACCGGTAAACCCAAGGGTGTTCTACATACGACTGGAGGATATATGGTTTACACTGCTACGACCTTCAAGTATGCTTTTGATTATAAACCTT CCGACATCTACTGGTGCACTGCTGATTGTGGATGGATCACTGGCCACAGCTATGTGACTTATGGACCTTTGCTTAATGGAGCTAGCGTTGTAATTTATGA AGGGGCACCAAATTATCCTGATGCTGGTCGCTGCTGGGATATTGTCGACAAATTTAAAGTGACAATCTTCTACACTGCCCCAACATTGGTGCGGTCCCTT ATGCGTGATGGTGATGATTATGTCACTCGCTATTCCCGCAAGTCCTTACGAGTCCTTGGAAGTGTAGGCGAGCCTATTAATCCAAGTGCATGGAGGTGGT TCTTCAATGTAATAGGAGATTCGAGGTGCCCGATATCTGACACTTGGTGGCAGACTGAAACTGGCGGCTTCATGATCACCCCTTTACCGGGTGCCTGGCC ACAGAAGCCTGGTTCTGCTACTTTCCCTTTCTTTGGTGTTCAGCCTGTAATAGTGGATGAAAAGGGTGTTGAGATAGAAGGAGAGTGCAGTGGGTATCTT TGTGTTAAAAGCTCATGGCCTGGGGCATTTCGTACTCTTTATGGAGACCATGAGAGATATGAAACCACGTACTTTAAGCCATTCCCTGGTTATTATTTTA GTGGTGATGGCTGCAGCAGGGACAAGGATGGGTACTACTGGCTTACTGGAAGAGTTGATGATGTCATCAATGTCAGTGGACACCGTATAGGGACAGCGGA AGTGGAATCTGCTCTTGTTTCTCACCCTCAATGTGCAGAAGCTGCTGTGGTTGGCATTGAGCATGAGGTTAAGGGGCAGGGTATATATGCATTTGTCACC CTTGTAGATGGTGTTCCATACAGTGAAGGGCTCCGAAAAGACCTAATAACTGCCGTACGAAAACAGATAGGACCGTTTGCAGCACCTGATAGGATACACT GGGCTCCTGGCCTACCGAAGACGAGAAGTGGTAAGATAATGAGAAGGGTTCTTAGAAAGATTGCGTCCAAGCAATTGGATGAGCTTGGAGACACTAGTAC GCTGGCGGATCCCGGTGTAGTCGACCAACTTATAGCGCTTGCCGATAGCTGA
AA sequence Show only first row Show all	>Lus10012595 pacid=23143894 polypeptide=Lus10012595 locus=Lus10012595.g ID=Lus10012595.BGIv1.0 annot-version=v1.0 MMSSPSSSSYRAGGIEGVSVGSRTHHLLLHLHAASSLSSPYLSLLSPPLTPHINSKFKSSLRSVKPPTSALLSQPKLSFTTPSDPMSSFQTTTNHLRHVE SMNLLPSGAGKIPRLNAVILGESLASEEDDLVFPSDHFSRQALVPSPHKYLEMYKRSVEDPAGFWSDIASQFFWKTKWGDTVCSENFDVRSGNVFIQWFK GGITNICYNCVDRNVESGNGDKIAMYWEGNERGTQDSLTYSQLLHKVCQLANYLRDTGVKKGDAVVIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDS LAQRIMDSRPKAVITCNAVKRGSKVIQLKDIVDAALTDSAKNGFSVGACLTYENESAMKRENTKWKEGRDVWWQDVVPKYSTSCEVEWVDAEDPLFLLYT SGSTGKPKGVLHTTGGYMVYTATTFKYAFDYKPSDIYWCTADCGWITGHSYVTYGPLLNGASVVIYEGAPNYPDAGRCWDIVDKFKVTIFYTAPTLVRSL MRDGDDYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVIGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYL CVKSSWPGAFRTLYGDHERYETTYFKPFPGYYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGIEHEVKGQGIYAFVT LVDGVPYSEGLRKDLITAVRKQIGPFAAPDRIHWAPGLPKTRSGKIMRRVLRKIASKQLDELGDTSTLADPGVVDQLIALADS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36880		ACS	acetyl-CoA synthetase (.1.2)		Lus10012595 [exp]	0	1
AT1G49960			Xanthine/uracil permease famil...		Lus10034125 [exp]	3.0	0.7305
AT3G02645			Plant protein of unknown funct...		Lus10022538 [exp]	4.9	0.7017
AT2G35610		XEG113	xyloglucanase 113 (.1)		Lus10005034 [exp]	5.7	0.6787
AT1G35510			O-fucosyltransferase family pr...		Lus10009450 [exp]	22.3	0.6803
AT5G01460			LMBR1-like membrane protein (....		Lus10035505 [exp]	32.9	0.6906
AT1G47380			Protein phosphatase 2C family ...		Lus10006485 [exp]	33.9	0.6995
AT4G30390			unknown protein		Lus10020378 [exp]	46.4	0.6769
AT5G42860			unknown protein		Lus10009749 [exp]	50.8	0.6695
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Lus10040886 [exp]	59.6	0.6678
AT2G04780		FLA7	FASCICLIN-like arabinoogalacta...		Lus10012351 [exp]	75.0	0.6441

Compare expression of checked genes

Lus10012595 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.