Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11260 62 / 2e-11 ATSTP1, STP1 sugar transporter 1 (.1) AT3G19940 61 / 5e-11 Major facilitator superfamily protein (.1) AT1G50310 55 / 3e-09 ATSTP9 sugar transporter 9 (.1) AT5G23270 55 / 5e-09 ATSTP11, STP11 sugar transporter 11 (.1) AT3G19930 53 / 3e-08 ATSTP4, STP4 sugar transporter 4 (.1) AT4G21480 52 / 3e-08 STP12 sugar transporter protein 12 (.1) AT1G77210 47 / 2e-06 AtSTP14 sugar transport protein 14, sugar transporter 14 (.1.2) AT5G26250 44 / 3e-05 Major facilitator superfamily protein (.1) AT4G02050 44 / 3e-05 STP7 sugar transporter protein 7 (.1) AT1G34580 43 / 6e-05 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012766 [exp] 74 / 1e-16 AT4G21480 50 / 2e-07 sugar transporter protein 12 (.1) Lus10040991 [exp] 63 / 1e-11 AT3G19940 666 / 0.0 Major facilitator superfamily protein (.1) Lus10013441 [exp] 57 / 1e-09 AT1G50310 731 / 0.0 sugar transporter 9 (.1) Lus10040993 [exp] 57 / 1e-09 AT1G50310 601 / 0.0 sugar transporter 9 (.1) Lus10018422 [exp] 56 / 2e-09 AT1G11260 835 / 0.0 sugar transporter 1 (.1) Lus10002597 [exp] 56 / 2e-09 AT1G11260 798 / 0.0 sugar transporter 1 (.1) Lus10042516 [exp] 55 / 6e-09 AT1G11260 608 / 0.0 sugar transporter 1 (.1) Lus10022421 [exp] 47 / 2e-06 AT1G77210 790 / 0.0 sugar transport protein 14, sugar transporter 14 (.1.2) Lus10020934 [exp] 44 / 2e-05 AT1G34580 664 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G090700 [exp] 60 / 1e-10 AT3G19940 710 / 0.0 Major facilitator superfamily protein (.1) Potri.007G073900 [exp] 58 / 4e-10 AT3G19940 706 / 0.0 Major facilitator superfamily protein (.1) Potri.007G073850 [exp] 57 / 7e-10 AT3G19940 699 / 0.0 Major facilitator superfamily protein (.1) Potri.007G073800 [exp] 57 / 7e-10 AT3G19940 699 / 0.0 Major facilitator superfamily protein (.1) Potri.007G072800 [exp] 56 / 2e-09 AT3G19940 672 / 0.0 Major facilitator superfamily protein (.1) Potri.004G033600 [exp] 54 / 7e-09 AT1G11260 822 / 0.0 sugar transporter 1 (.1) Potri.011G042100 [exp] 54 / 9e-09 AT1G11260 808 / 0.0 sugar transporter 1 (.1) Potri.004G110630 [exp] 52 / 4e-08 AT1G11260 629 / 0.0 sugar transporter 1 (.1) Potri.004G109765 [exp] 52 / 6e-08 AT1G11260 630 / 0.0 sugar transporter 1 (.1) Potri.004G101950 [exp] 52 / 6e-08 AT1G11260 625 / 0.0 sugar transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10012596 pacid=23143812 polypeptide=Lus10012596 locus=Lus10012596.g ID=Lus10012596.BGIv1.0 annot-version=v1.0 ATGGTGATCGGCCATATGCCCATCGTGATGGGCATCTTCATGGCCCACCTAGTCAGCTCTGAGATAATGGACCACTTGGACGAGTGCTCGCGGTGGCGCG TGCGTCTAGGAGTCGCGTCCGTCCCCGCCATATCCGCCATCGGGTACCATCTCTTATTCAATTTGTCTTTCGGCCTCCCCTTCGCACCAGAAGAAGAAGA AGAAGAAGATATCAAGGTTGGTGAATCATCAACGAGGGCGGCCAACATCAAGCCACGTGATTACCTAGCGGAGGAGGTGGATGAGGAGCTAGCCGTGCCG TCGCTAAAGCAAAAAGAGGGACGTGAGCAATCACCGTGGGTCCGTCCTCGTTACTACTATCTAGTGGCGGCATTGACCGTCCCCTTGCTAATGCAGAAGT TGACTGGTGTCAACCTCGTCGTGATGTTTTATCTTCCGGTGCTTTTCCATGCCATTTTTGTCGGGAGCGATGCCTGCTTGCTTTGCTCCGTCGTCATCAA CGTGGCATTGGCGCTTGTTTTGCCCATACCGATTTGA
AA sequence Show only first row Show all	>Lus10012596 pacid=23143812 polypeptide=Lus10012596 locus=Lus10012596.g ID=Lus10012596.BGIv1.0 annot-version=v1.0 MVIGHMPIVMGIFMAHLVSSEIMDHLDECSRWRVRLGVASVPAISAIGYHLLFNLSFGLPFAPEEEEEEDIKVGESSTRAANIKPRDYLAEEVDEELAVP SLKQKEGREQSPWVRPRYYYLVAALTVPLLMQKLTGVNLVVMFYLPVLFHAIFVGSDACLLCSVVINVALALVLPIPI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11260		ATSTP1, STP1	sugar transporter 1 (.1)		Lus10012596 [exp]	0	1
AT1G07175			unknown protein		Lus10018252 [exp]	4.2	0.7272
					Lus10038105 [exp]	4.5	0.7901
					Lus10019810 [exp]	17.9	0.7158
AT5G24090		ATCHIA	chitinase A (.1)		Lus10037984 [exp]	32.5	0.6472
AT3G15280			unknown protein		Lus10005404 [exp]	33.6	0.6636
AT5G54010			UDP-Glycosyltransferase superf...		Lus10008453 [exp]	34.4	0.6633
AT3G19920			unknown protein		Lus10010180 [exp]	36.8	0.6476
					Lus10036275 [exp]	39.2	0.6602
					Lus10015230 [exp]	39.2	0.6783
AT5G12060			Plant self-incompatibility pro...		Lus10023195 [exp]	39.6	0.6610

Compare expression of checked genes

Lus10012596 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.