Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15640 457 / 5e-161 Mitochondrial substrate carrier family protein (.1) AT1G72820 249 / 6e-79 Mitochondrial substrate carrier family protein (.1) AT5G26200 244 / 4e-77 Mitochondrial substrate carrier family protein (.1) AT1G07030 107 / 1e-25 Mitochondrial substrate carrier family protein (.1) AT2G30160 102 / 4e-24 Mitochondrial substrate carrier family protein (.1) AT1G34065 85 / 8e-18 SAMC2 S-adenosylmethionine carrier 2 (.1) AT4G39460 82 / 5e-17 SAMC1, SAMT1 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) AT4G11440 84 / 6e-17 Mitochondrial substrate carrier family protein (.1) AT5G42130 83 / 7e-17 AtMfl1 MitoFerrinLike1, Mitochondrial substrate carrier family protein (.1) AT3G54110 72 / 9e-14 ATUCP1, UCP1, UCP2, UCP, ATPUMP1 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041498 [exp] 602 / 0 AT5G15640 494 / 2e-177 Mitochondrial substrate carrier family protein (.1) Lus10035134 [exp] 506 / 1e-179 AT5G15640 477 / 2e-170 Mitochondrial substrate carrier family protein (.1) Lus10031969 [exp] 419 / 1e-146 AT5G15640 404 / 3e-143 Mitochondrial substrate carrier family protein (.1) Lus10026468 [exp] 221 / 5e-68 AT5G26200 416 / 7e-146 Mitochondrial substrate carrier family protein (.1) Lus10025015 [exp] 216 / 5e-66 AT5G26200 414 / 3e-145 Mitochondrial substrate carrier family protein (.1) Lus10026466 [exp] 212 / 2e-64 AT5G26200 409 / 5e-143 Mitochondrial substrate carrier family protein (.1) Lus10026395 [exp] 109 / 2e-26 AT2G30160 483 / 5e-173 Mitochondrial substrate carrier family protein (.1) Lus10042258 [exp] 108 / 5e-26 AT2G30160 484 / 2e-173 Mitochondrial substrate carrier family protein (.1) Lus10006812 [exp] 84 / 1e-17 AT4G39460 478 / 6e-171 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G098500 [exp] 486 / 3e-172 AT5G15640 460 / 3e-164 Mitochondrial substrate carrier family protein (.1) Potri.004G117000 [exp] 486 / 8e-172 AT5G15640 434 / 1e-153 Mitochondrial substrate carrier family protein (.1) Potri.008G100100 [exp] 297 / 6e-98 AT5G15640 338 / 5e-116 Mitochondrial substrate carrier family protein (.1) Potri.018G050300 [exp] 235 / 3e-73 AT1G72820 435 / 2e-153 Mitochondrial substrate carrier family protein (.1) Potri.006G223600 [exp] 233 / 9e-73 AT1G72820 429 / 7e-151 Mitochondrial substrate carrier family protein (.1) Potri.016G125200 [exp] 121 / 1e-30 AT1G07030 436 / 1e-154 Mitochondrial substrate carrier family protein (.1) Potri.001G282400 [exp] 110 / 1e-26 AT1G07030 426 / 1e-150 Mitochondrial substrate carrier family protein (.1) Potri.009G077600 [exp] 106 / 3e-25 AT1G07030 425 / 4e-150 Mitochondrial substrate carrier family protein (.1) Potri.005G189600 [exp] 83 / 4e-17 AT5G42130 542 / 0.0 MitoFerrinLike1, Mitochondrial substrate carrier family protein (.1) Potri.005G085900 [exp] 82 / 4e-17 AT4G39460 487 / 9e-175 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10012597 pacid=23143898 polypeptide=Lus10012597 locus=Lus10012597.g ID=Lus10012597.BGIv1.0 annot-version=v1.0 ATGGAGGAGAGTGAAGCTGCTGGAGGATTGTGTGTTCGGAGTCCTCTCACGACTCCTCCACTTCTACAAACCCTATATAGATCAACTCTACCAAACGTCA TACATCAAACCCATCAACCCCAGTACAACCATATCAACACAATTACCCGAATCACCTCGATCGACAAGGCGACGGCTACTCGACGCGACAACTCCGACGA GATACTTTGGGGCGACAGGCGTTGGAGGAGGCCCGAACCAGTGATTACGCGTGCGATTTTGGCACGTAACAGGTCGTCGGAGGTAGGAAGGAAGGAATTC AATTTCCTCGTCAGCAGGAATTGCTTTCGCTCCAATTTTTATCATTTAACTGAAAACAGAAAAAGATTATCCACCGCCGATTCTTCTTCCTCCAAGACTC CGATGGAGTCCGCATCTACTAACGTCCGACCACAGCCCTTTGGCCAGACCGAGATTAACTGGGACAAGCTCGACAAGACTAAGTTTTATGTTGTAGGAGC TGGCATTTTCACTGGCGTTACTGTAGCATTGTATCCTATGTCCGTAATCAAAACCAGACTCCAGGTTGCTACGAAGGATACCGTTGAGAAAAATGCATTG TCTGTTATCAAAGGCTTGCTGAAGACAGATGGTGTTCCTGGTCTATACCGAGGGTTTGGCACTGTGGTAACTGGGGCAATTCCCACTAGGATTGTCTTTC TCACAGCTTTAGAGACCACAAAAGTGGCTTCTTTCAAAATGGTTGAACCATTCAAGTTATCTGAAGCTTCACAAGCTGCTGTAGCTAATGGGATTGCTGG CATGACAGCATCTTTGTTATCGCAGACTTTGTTTGTTCCTATCGATGTGGTCAGTCAAAAGTTGATGGTGCAAGGATACTCTGGTCATCGGAGATATAAA GGCGGTCTTGATGTAGTTCGTAAAGTTATTCAGAGTGATGGAATCAGAGGGTTATATAAAGGATTTGGCCTTTCAGTAATGACTTATGCTCCATCTAGTG CTGTATGGTGGGCTAGCTATGGATCAAGCCAACGCATCATATGGAGGTATCTAGGACATGGGGCTGATGTGGTGCCTGCTGCCCCTAGTGAGACGAAGAT AGTCCTAGTTCAAGCTGCTGGAGGAATTATTGCAGGAGCAACTGCTTCCTGCATCACAACTCCATTGGACACTATAAAGACGCGTTTGCAGGTGATGGGG CATGCGAGGGAAAGCTCAACCAGACAGGTTGTTAAAAACTTGTTAAGGGATGATGGTTGGAGTGGTTTATACAAGGGATTAGGTCCACGATTTTTCAGCA TGTCAGCATGGGGAACTTCTATGATATTATCATATGAATATTTGAGTATGTACTTTTCTTCACTTAATTCGCTCTTTTCCATGGTAGTGTAG
AA sequence Show only first row Show all	>Lus10012597 pacid=23143898 polypeptide=Lus10012597 locus=Lus10012597.g ID=Lus10012597.BGIv1.0 annot-version=v1.0 MEESEAAGGLCVRSPLTTPPLLQTLYRSTLPNVIHQTHQPQYNHINTITRITSIDKATATRRDNSDEILWGDRRWRRPEPVITRAILARNRSSEVGRKEF NFLVSRNCFRSNFYHLTENRKRLSTADSSSSKTPMESASTNVRPQPFGQTEINWDKLDKTKFYVVGAGIFTGVTVALYPMSVIKTRLQVATKDTVEKNAL SVIKGLLKTDGVPGLYRGFGTVVTGAIPTRIVFLTALETTKVASFKMVEPFKLSEASQAAVANGIAGMTASLLSQTLFVPIDVVSQKLMVQGYSGHRRYK GGLDVVRKVIQSDGIRGLYKGFGLSVMTYAPSSAVWWASYGSSQRIIWRYLGHGADVVPAAPSETKIVLVQAAGGIIAGATASCITTPLDTIKTRLQVMG HARESSTRQVVKNLLRDDGWSGLYKGLGPRFFSMSAWGTSMILSYEYLSMYFSSLNSLFSMVV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15640			Mitochondrial substrate carrie...		Lus10012597 [exp]	0	1
AT1G64610			Transducin/WD40 repeat-like su...		Lus10003206 [exp]	3.9	0.8226
AT4G11110		SPA2	SPA1-related 2 (.1)		Lus10033942 [exp]	4.5	0.8280
AT2G38610			RNA-binding KH domain-containi...		Lus10035608 [exp]	6.9	0.7906
AT1G55535			unknown protein		Lus10010333 [exp]	7.2	0.8259
AT5G64220	CAMTA		Calmodulin-binding transcripti...		Lus10036162 [exp]	7.5	0.8310
AT4G35440		CLCE, ATCLC-E, ...	chloride channel E (.1.2)		Lus10026574 [exp]	8.7	0.8037
AT3G46980		PHT4;3	phosphate transporter 4;3 (.1....		Lus10018203 [exp]	8.8	0.8041
AT5G01990			Auxin efflux carrier family pr...		Lus10035610 [exp]	9.9	0.8047
AT1G65580		FRA3	FRAGILE FIBER3, Endonuclease/e...		Lus10024112 [exp]	10.7	0.8205
AT1G67960		POD1	POLLEN DEFECTIVE IN GUIDANCE 1...		Lus10015372 [exp]	11.4	0.7888

Compare expression of checked genes

Lus10012597 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.