Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02210 688 / 0 COBL1 COBRA-like protein 1 precursor (.1) AT5G60920 672 / 0 COB COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT3G29810 649 / 0 COBL2 COBRA-like protein 2 precursor (.1) AT5G15630 594 / 0 IRX6, COBL4 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT1G09790 439 / 3e-152 COBL6 COBRA-like protein 6 precursor (.1) AT5G60950 214 / 1e-67 COBL5 COBRA-like protein 5 precursor (.1) AT4G16120 149 / 5e-39 ATSEB1, COBL7 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) AT5G49270 147 / 2e-38 DER9, MRH4, SHV2, COBL9 SHAVEN 2, MUTANT ROOT HAIR 4, DEFORMED ROOT HAIRS 9, COBRA-LIKE 9, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT3G16860 132 / 4e-33 COBL8 COBRA-like protein 8 precursor (.1) AT3G20580 125 / 1e-30 COBL10 COBRA-like protein 10 precursor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034379 [exp] 842 / 0 AT3G02210 685 / 0.0 COBRA-like protein 1 precursor (.1) Lus10034671 [exp] 687 / 0 AT5G60920 732 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10021144 [exp] 682 / 0 AT5G60920 749 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10007986 [exp] 681 / 0 AT5G60920 755 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10031972 [exp] 589 / 0 AT5G15630 704 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10035131 [exp] 587 / 0 AT5G15630 704 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10017863 [exp] 580 / 0 AT5G15630 717 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10034670 [exp] 578 / 0 AT5G15630 715 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10034666 [exp] 572 / 0 AT5G15630 627 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G117100 [exp] 708 / 0 AT3G02210 724 / 0.0 COBRA-like protein 1 precursor (.1) Potri.015G060000 [exp] 698 / 0 AT5G60920 759 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.017G098700 [exp] 604 / 0 AT5G60920 614 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.015G060100 [exp] 596 / 0 AT5G15630 739 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.017G098600 [exp] 589 / 0 AT5G60920 601 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.015G060200 [exp] 569 / 0 AT5G15630 669 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.004G117200 [exp] 559 / 0 AT5G15630 679 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.012G062200 [exp] 533 / 0 AT5G15630 586 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.004G219200 [exp] 479 / 3e-168 AT1G09790 511 / 2e-180 COBRA-like protein 6 precursor (.1) Potri.004G167100 [exp] 397 / 9e-136 AT3G29810 407 / 2e-139 COBRA-like protein 2 precursor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04833 [flax] [poplar] COBRA COBRA-like protein
Representative CDS sequence Show only first row Show all	>Lus10012598 pacid=23143868 polypeptide=Lus10012598 locus=Lus10012598.g ID=Lus10012598.BGIv1.0 annot-version=v1.0 ATGGGACGACGACTCATCTCCAGAGTCACCATTCTTCTGCTTTCCCTCATCTTTACTCCAACAACAGAAGCTTATGATCCGCTTGACCCGAATGGAAATA TCACTATCAAATGGGACGTAATCACCTGGAACGCTGATGGCTACAATGCGGCAGTGACACTGTACAACTTCCAGCAGTATCGTCACATCCAAGCACCAGG ATGGACATTGGGATGGACATGGCAAAAGAGGGAAGTGATATGGGACATGGTTGGGGCGCAGACTACCGATCAGGGCGATTGTTCGAGATTCAAAGGTACC AATATTCCACATTGCTGCAAGAAGATCCCCACTGTTGTGGATTTGTTGCCCGGAACTCCTTACAACAAGCAGGTTGGCAACTGCTGCAAGGGCGGAGTGT TAACTTCGTGGGCGCAAGATCAAGACAATGCTGCTGCTTCTTTCCAGATTAGTGTTGGTCAAGCTGGAACCAACAATAAGACGGTTAAGCCGCCTGTGAA CTTCACTCTGCTGGCTCCTGGACCTGGCTATACTTGTAGCCCGGCTAAAATTGTCAGACCGAGTAGGTTCTTGAGTCCTGATAAGAGAAGGTTCACCCAA GCTCTGATGACTTGGAATTTAACATGCACATACTCTCAGACACTTGCTCAGAAGACCCCTACCTGTTGCGTTTCACTATCATCGTTCTATAATGATACGA TTGTGCCCTGTCCAACATGCTCTTGTGGCTGCAGAAGCAACATTACCCAATCTAGAAGCTGTGTTAACCCGGATACGCCACATTTAGCTTCGGTTGTCTC GAGTCCTGGGAAGAACAGCTTGGCTCCTCTTGTTCAGTGTACAAACCACATGTGCCCCATCAGAGTTCATTGGCACGTTAAACTCAACTACAAGCAGTAC TGGCGAGTGAAGGTCACCATCACCAATTTCAACTACGCGATGAACTATTCCGAGTGGAACTTAGTGGTTCAGCATCCCAACTTTGACAATCTCACCCAGA TATTCAGCTTCAATTACAAGTCTTTGACTCCATATGCATCCATCAATGATACTGCATTGTTGTGGGGAGTGAAGTTCTATAACGATCTGCTCATGCAAGC TGGCCCATCTGGCAACGTCCAGTCGGAGTTGCTCTTCCAGAAAGAAACAACAACTTTCACGTTCGACAAAGGTTGGGCATTCCCTAGAAGGATCTACTTC AATGGCGACAACTGTGTAATGCCTCCTCCAGATGCCTACCCTTGGTTACCAAATGCTAGCTCGCACCGCCACATCTCCCTCTCGCTTCTTCTTATCACTA CCTTCACTGCTCTCGCTTTGCTACTGTGA
AA sequence Show only first row Show all	>Lus10012598 pacid=23143868 polypeptide=Lus10012598 locus=Lus10012598.g ID=Lus10012598.BGIv1.0 annot-version=v1.0 MGRRLISRVTILLLSLIFTPTTEAYDPLDPNGNITIKWDVITWNADGYNAAVTLYNFQQYRHIQAPGWTLGWTWQKREVIWDMVGAQTTDQGDCSRFKGT NIPHCCKKIPTVVDLLPGTPYNKQVGNCCKGGVLTSWAQDQDNAAASFQISVGQAGTNNKTVKPPVNFTLLAPGPGYTCSPAKIVRPSRFLSPDKRRFTQ ALMTWNLTCTYSQTLAQKTPTCCVSLSSFYNDTIVPCPTCSCGCRSNITQSRSCVNPDTPHLASVVSSPGKNSLAPLVQCTNHMCPIRVHWHVKLNYKQY WRVKVTITNFNYAMNYSEWNLVVQHPNFDNLTQIFSFNYKSLTPYASINDTALLWGVKFYNDLLMQAGPSGNVQSELLFQKETTTFTFDKGWAFPRRIYF NGDNCVMPPPDAYPWLPNASSHRHISLSLLLITTFTALALLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02210		COBL1	COBRA-like protein 1 precursor...		Lus10012598 [exp]	0	1
AT1G54460			TPX2 (targeting protein for Xk...		Lus10006563 [exp]	2.2	0.7639
AT4G22570		APT3	adenine phosphoribosyl transfe...		Lus10024612 [exp]	5.7	0.7727
AT5G55180			O-Glycosyl hydrolases family 1...		Lus10029149 [exp]	12.4	0.7572
AT3G63170			Chalcone-flavanone isomerase f...		Lus10042591 [exp]	14.4	0.7946
AT4G13270			Late embryogenesis abundant (L...		Lus10024264 [exp]	18.3	0.7310
AT5G17210			Protein of unknown function (D...		Lus10010077 [exp]	19.9	0.7654
AT3G56820			unknown protein		Lus10012105 [exp]	22.5	0.7809
AT4G00090			Transducin/WD40 repeat-like su...		Lus10030275 [exp]	24.1	0.7580
AT3G24860	Trihelix		Homeodomain-like superfamily p...		Lus10022789 [exp]	27.1	0.7018
AT3G63170			Chalcone-flavanone isomerase f...		Lus10022045 [exp]	28.7	0.6893

Compare expression of checked genes

Lus10012598 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.