Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G09990 261 / 3e-91 Ribosomal protein S5 domain 2-like superfamily protein (.1) AT5G18380 261 / 5e-91 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3) AT3G04230 245 / 5e-85 Ribosomal protein S5 domain 2-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034378 [exp] 301 / 5e-107 AT5G18380 261 / 4e-91 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3) Lus10035133 [exp] 289 / 5e-102 AT2G09990 258 / 4e-90 Ribosomal protein S5 domain 2-like superfamily protein (.1) Lus10031970 [exp] 289 / 5e-102 AT2G09990 258 / 4e-90 Ribosomal protein S5 domain 2-like superfamily protein (.1) Lus10038012 [exp] 286 / 4e-101 AT2G09990 258 / 5e-90 Ribosomal protein S5 domain 2-like superfamily protein (.1) Lus10009252 [exp] 286 / 4e-101 AT2G09990 258 / 5e-90 Ribosomal protein S5 domain 2-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G304700 [exp] 277 / 1e-97 AT2G09990 267 / 9e-94 Ribosomal protein S5 domain 2-like superfamily protein (.1) Potri.008G150000 [exp] 271 / 3e-95 AT2G09990 262 / 1e-91 Ribosomal protein S5 domain 2-like superfamily protein (.1) Potri.010G091000 [exp] 270 / 8e-95 AT2G09990 260 / 7e-91 Ribosomal protein S5 domain 2-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [flax] [poplar] S5 PF00380 [flax] [poplar] Ribosomal_S9 Ribosomal protein S9/S16
Representative CDS sequence Show only first row Show all	>Lus10012599 pacid=23143903 polypeptide=Lus10012599 locus=Lus10012599.g ID=Lus10012599.BGIv1.0 annot-version=v1.0 ATGGCGACAGCAGCAGCTGCTTCCCCAATCGAGTCCGTCCAGTGCTTCGGCCGCAAGAAGACTGCGGTCGCCGTCACTCACTGCAAGCGCGGAAGGGGCC TCATCAAGCTCAATGGAACCCCCATCGAGCTCGTGGAGCCTGAGATCCTCCGTTTCAAGGCCGTCGAACCCATTCTCATACTAGGCCGTCACCGTTTCAG CGGCGTGGATATGCGCATCCGAGTCAAAGGAGGCGGACACACCTCTCAGATCTACGCCATCCGTCAGAGCATCGCCAAGGCACTCGTCGCTTTCTACCAG AAGTACGTCGACGAGCAGAGCAAGAAGGAGATCAAGGACCTCTTGGTCAGCTACGACAGGACTTTGCTCGTCGCTGATCCCAGACGTTGCGAGCCTAAGA AGTTCGGTGGCCGTGGTGCTCGTTCCAGATTCCAGAAGAGTTACCGTTGA
AA sequence Show only first row Show all	>Lus10012599 pacid=23143903 polypeptide=Lus10012599 locus=Lus10012599.g ID=Lus10012599.BGIv1.0 annot-version=v1.0 MATAAAASPIESVQCFGRKKTAVAVTHCKRGRGLIKLNGTPIELVEPEILRFKAVEPILILGRHRFSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQ KYVDEQSKKEIKDLLVSYDRTLLVADPRRCEPKKFGGRGARSRFQKSYR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18380			Ribosomal protein S5 domain 2-...		Lus10012599 [exp]	0	1
AT3G49010		RSU2, ATBBC1	40S RIBOSOMAL PROTEIN, breast ...		Lus10009578 [exp]	2.0	0.9084
AT3G44620			protein tyrosine phosphatases;...		Lus10019533 [exp]	3.5	0.8750
AT2G37270		ATRPS5B	ribosomal protein 5B (.1.2)		Lus10013381 [exp]	3.7	0.9031
AT5G48760			Ribosomal protein L13 family p...		Lus10022793 [exp]	4.2	0.8814
AT1G80560		ATIMD2	ARABIDOPSIS ISOPROPYLMALATE DE...		Lus10030344 [exp]	5.0	0.8751
AT5G23740		RPS11-BETA	ribosomal protein S11-beta (.1...		Lus10005348 [exp]	6.5	0.8747
AT1G48830			Ribosomal protein S7e family p...		Lus10017497 [exp]	6.6	0.8762
AT1G50920			Nucleolar GTP-binding protein ...		Lus10027370 [exp]	6.9	0.8496
AT1G16790			ribosomal protein-related (.1)		Lus10034801 [exp]	7.2	0.8313
AT2G31610			Ribosomal protein S3 family pr...		Lus10033442 [exp]	8.5	0.8665

Compare expression of checked genes

Lus10012599 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.