Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13680 431 / 1e-151 PLC-like phosphodiesterases superfamily protein (.1) AT5G67130 402 / 5e-139 PLC-like phosphodiesterases superfamily protein (.1) AT1G49740 384 / 9e-133 PLC-like phosphodiesterases superfamily protein (.1) AT4G36945 377 / 1e-129 PLC-like phosphodiesterases superfamily protein (.1) AT3G19310 362 / 3e-123 PLC-like phosphodiesterases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035130 [exp] 595 / 0 AT1G13680 437 / 7e-154 PLC-like phosphodiesterases superfamily protein (.1) Lus10031973 [exp] 588 / 0 AT1G13680 435 / 1e-153 PLC-like phosphodiesterases superfamily protein (.1) Lus10000649 [exp] 472 / 3e-167 AT1G13680 435 / 4e-153 PLC-like phosphodiesterases superfamily protein (.1) Lus10014072 [exp] 389 / 2e-133 AT1G49740 522 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Lus10009368 [exp] 387 / 9e-133 AT5G67130 580 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Lus10019843 [exp] 383 / 2e-131 AT1G49740 524 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Lus10019339 [exp] 363 / 2e-123 AT4G36945 462 / 1e-161 PLC-like phosphodiesterases superfamily protein (.1) Lus10012665 [exp] 235 / 2e-76 AT1G49740 273 / 4e-92 PLC-like phosphodiesterases superfamily protein (.1) Lus10000092 [exp] 162 / 2e-48 AT4G36945 188 / 2e-58 PLC-like phosphodiesterases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G098900 [exp] 573 / 0 AT1G13680 450 / 3e-159 PLC-like phosphodiesterases superfamily protein (.1) Potri.011G144900 [exp] 567 / 0 AT1G13680 462 / 2e-163 PLC-like phosphodiesterases superfamily protein (.1) Potri.004G117500 [exp] 537 / 0 AT1G13680 447 / 8e-158 PLC-like phosphodiesterases superfamily protein (.1) Potri.004G140200 [exp] 395 / 3e-136 AT1G49740 548 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Potri.005G139400 [exp] 389 / 3e-134 AT4G36945 505 / 4e-179 PLC-like phosphodiesterases superfamily protein (.1) Potri.007G045700 [exp] 389 / 7e-134 AT5G67130 591 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Potri.007G045200 [exp] 387 / 4e-133 AT4G36945 520 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Potri.005G140100 [exp] 384 / 2e-131 AT5G67130 572 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Potri.009G100332 [exp] 249 / 2e-81 AT1G49740 341 / 9e-118 PLC-like phosphodiesterases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012600 pacid=23143838 polypeptide=Lus10012600 locus=Lus10012600.g ID=Lus10012600.BGIv1.0 annot-version=v1.0 ATGGGTAGCAGCAGCAGGAGCTTTCGGTTGATGATCGGAGCAGCAGTACTACTCCTCCTCGCATTTTCTTCTTCGCCGGCATTTGGTTGCTCCGACGGAC AATGCAAGGAGATGGAGGCGTGCTCGTCGGATAAAGATTGCGGAGCTGGGCTGTACTGCTTCAGCTGCTTGGAGAAGGTGACGTCAGGGTCCAGGTGTGT TAGATACACCGCCACTAACCAGTTCCAGCTCCTGAACAATTCTCTGCCATTCAACAAGTACGCATTCTTAACAACCCACAACGCATTCGCAATCGACGGA TACCCACAGCACACTCCCCTACCTCGACTCACCGAGACCAATCAGGAAGACAGCATCACTGATCAGCTTCAGAACGGAGTGAGGGCATTGATGCTCGACA CATACGATTTCCAAGGTGACGTCTGGATGTGCCATTCCTTCGGTGGCAAGTGCTACGATTTCACTGCATTCGGTCCTGCAATTGACTATCTCAAGGAGAT TGAGGCCTTCATGTCAGCAAACCCGTCTGAGATCGTGACAATCATCCTGGAAGACTACGTTCACGCCGACCACGGGTTGACCAATGTGTTCACTGATGCT GGACTGATGAAGTACTGGTTCCCACTGTCCAACATGCCTGCCAACGGTGGAGATTGGCCGTTAGTAAGTGACATGGTGAAGAACAACCAGAGGCTGCTTG TGTTCACCTCGGTTCAGTCCAAGGAAGCGAGTGAAGGGATTGCTTACCAGTGGAATTACATGGTTGAGAACCAATATGGGGATGGAGGGATGAAGGCAGG GAATTGTCCGAACAGAGGTGAATCGTCGCCCTTGAACGACACGACAAAGTCGTTGGTGCTGGTGAACTACTTCAGGTCGATTCCAATGAAGGAGCTTGCT TGTGGGGATAACTCTGGGAGTCTGATTGACATGCTACCAACGTGTGAGGCTGCTTCTGGGAATAGATGGGCCAATTTCCTTGCCGTGGACTACTACAAAA GAAGTGAAGGAGGAGGAGCGTTTGAAGCGCTGGACACTCTTAATGGGAAGCTATTGTGTGGATGCAGTGATGTTCATGGCTGTGTGAGTGGATCAGGTCC AGGGGCGTGCAATCCTTAA
AA sequence Show only first row Show all	>Lus10012600 pacid=23143838 polypeptide=Lus10012600 locus=Lus10012600.g ID=Lus10012600.BGIv1.0 annot-version=v1.0 MGSSSRSFRLMIGAAVLLLLAFSSSPAFGCSDGQCKEMEACSSDKDCGAGLYCFSCLEKVTSGSRCVRYTATNQFQLLNNSLPFNKYAFLTTHNAFAIDG YPQHTPLPRLTETNQEDSITDQLQNGVRALMLDTYDFQGDVWMCHSFGGKCYDFTAFGPAIDYLKEIEAFMSANPSEIVTIILEDYVHADHGLTNVFTDA GLMKYWFPLSNMPANGGDWPLVSDMVKNNQRLLVFTSVQSKEASEGIAYQWNYMVENQYGDGGMKAGNCPNRGESSPLNDTTKSLVLVNYFRSIPMKELA CGDNSGSLIDMLPTCEAASGNRWANFLAVDYYKRSEGGGAFEALDTLNGKLLCGCSDVHGCVSGSGPGACNP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13680			PLC-like phosphodiesterases su...		Lus10012600 [exp]	0	1
AT1G47840		HXK3	hexokinase 3 (.1)		Lus10024336 [exp]	7.3	0.8960
AT2G03200			Eukaryotic aspartyl protease f...		Lus10035961 [exp]	8.1	0.9377
AT4G13930		SHM4	serine hydroxymethyltransferas...		Lus10043157 [exp]	9.2	0.9261
AT5G61840		GUT1, IRX10-L	Exostosin family protein (.1)		Lus10043209 [exp]	12.2	0.9374
AT1G19170			Pectin lyase-like superfamily ...		Lus10039909 [exp]	16.6	0.9339
AT4G13930		SHM4	serine hydroxymethyltransferas...		Lus10032592 [exp]	18.5	0.9317
AT3G23430		PHO1, ATPHO1	ARABIDOPSIS PHOSPHATE 1, phosp...		Lus10011799 [exp]	26.8	0.8839
AT3G51780		ATBAG4	BCL-2-associated athanogene 4 ...		Lus10027822 [exp]	26.8	0.9019
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10017175 [exp]	27.6	0.9249
AT4G11950			Protein of unknown function (D...		Lus10002998 [exp]	27.7	0.9047

Compare expression of checked genes

Lus10012600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.