Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01460 191 / 9e-61 bHLH bHLH057 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G46810 189 / 4e-59 bHLH bHLH070 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G61950 183 / 1e-57 bHLH bHLH067 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT3G24140 150 / 4e-44 bHLH bHLH097, FMA FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G22490 138 / 2e-40 bHLH bHLH094 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G72210 138 / 5e-40 bHLH bHLH096 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G06120 118 / 2e-33 bHLH MUTE, bHLH045 MUTE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G65320 112 / 2e-30 bHLH bHLH099 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G46690 111 / 9e-30 bHLH bHLH071 beta HLH protein 71 (.1) AT5G53210 91 / 7e-22 bHLH SPCH, bHLH098 SPEECHLESS, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010101 [exp] 287 / 3e-100 AT2G46810 199 / 1e-63 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10016680 [exp] 157 / 4e-46 AT3G24140 358 / 2e-120 FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10000332 [exp] 147 / 2e-43 AT1G22490 221 / 4e-70 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10029950 [exp] 145 / 2e-42 AT1G72210 226 / 4e-72 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10007139 [exp] 137 / 1e-38 AT3G24140 308 / 2e-101 FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10009475 [exp] 125 / 4e-35 AT1G72210 199 / 8e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10001271 [exp] 124 / 1e-34 AT1G72210 194 / 1e-59 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10010503 [exp] 103 / 2e-27 AT3G06120 191 / 4e-61 MUTE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10015902 [exp] 102 / 7e-26 AT1G72210 235 / 7e-75 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G180300 [exp] 223 / 2e-72 AT2G46810 228 / 2e-71 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G106300 [exp] 213 / 2e-68 AT2G46810 247 / 9e-79 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.013G025900 [exp] 160 / 3e-48 AT1G72210 243 / 2e-78 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G039800 [exp] 159 / 4e-48 AT1G72210 231 / 5e-74 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.007G097600 [exp] 157 / 4e-47 AT1G72210 167 / 2e-49 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G101900 [exp] 156 / 4e-47 AT1G72210 256 / 4e-84 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G071100 [exp] 150 / 7e-45 AT1G72210 177 / 1e-53 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G314400 [exp] 148 / 3e-43 AT3G24140 399 / 2e-137 FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.017G054500 [exp] 143 / 4e-41 AT3G24140 344 / 8e-116 FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.003G093200 [exp] 138 / 4e-40 AT5G46690 191 / 8e-59 beta HLH protein 71 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10012603 pacid=23161352 polypeptide=Lus10012603 locus=Lus10012603.g ID=Lus10012603.BGIv1.0 annot-version=v1.0 ATGACACACATTACGGTGGAGAGGAACCGCCGGAGACAGATGAACGAGCACCTCAACTCCCTTCGCTCCCTCATGCCCCCTTCCTACGGTCAGAGGGGAG ATCAAGCGTCGATTATTGGAGGAGCGATAGATTTTGTAAAGGAACTGGAGCAACTTGCGCAGTGCCTGGACGCGCAGAAGAGGATGAAATTAGGCGAAAT GACGAGGACCACGGCGGCAGCGGAGGAGGGAGAAGCGGAAGAGGGAAGGGTAAGAGCGGCAGTGGAGAAATCGGAGGCGGCGGAGATAGAGGTGACGGCG ATACAGAACCACGCAAACTTGAAGGTGAAGTGCGAGAGAAGGAGAGGGCAACTGGTGAGAGCCATAGTTGGGTTAGAGGAGCTTGGACTCACTGTCTTGC ACCTCAACATTGCTTCTTCGTCTTCTTCGACTATTTTTTATTCTTTCAATCTCAAGATAGAGGAAGAATGCAAGATAGGATCAGCTGATGAGGTGGCAGC AGCTGTGCATCAGATCTTCACCGATTATCAACAACAACAACGGCTACCTACCTAA
AA sequence Show only first row Show all	>Lus10012603 pacid=23161352 polypeptide=Lus10012603 locus=Lus10012603.g ID=Lus10012603.BGIv1.0 annot-version=v1.0 MTHITVERNRRRQMNEHLNSLRSLMPPSYGQRGDQASIIGGAIDFVKELEQLAQCLDAQKRMKLGEMTRTTAAAEEGEAEEGRVRAAVEKSEAAEIEVTA IQNHANLKVKCERRRGQLVRAIVGLEELGLTVLHLNIASSSSSTIFYSFNLKIEEECKIGSADEVAAAVHQIFTDYQQQQRLPT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46810	bHLH	bHLH070	basic helix-loop-helix (bHLH) ...		Lus10012603 [exp]	0	1
AT2G46810	bHLH	bHLH070	basic helix-loop-helix (bHLH) ...		Lus10010101 [exp]	1.0	0.9284
AT4G19420			Pectinacetylesterase family pr...		Lus10034766 [exp]	4.2	0.8689
AT1G02205		CER1	ECERIFERUM 1, Fatty acid hydro...		Lus10023110 [exp]	6.5	0.8516
AT5G13120		Pnsl5, ATCYP20-...	Photosynthetic NDH subcomplex...		Lus10011330 [exp]	15.7	0.8258
AT1G47740			PPPDE putative thiol peptidase...		Lus10032708 [exp]	17.7	0.8030
AT3G20390			endoribonuclease L-PSP family ...		Lus10021523 [exp]	19.6	0.8274
AT1G75060			unknown protein		Lus10017506 [exp]	20.0	0.8072
AT1G62760			Plant invertase/pectin methyle...		Lus10031132 [exp]	20.2	0.8217
AT5G18590			Galactose oxidase/kelch repeat...		Lus10034163 [exp]	22.4	0.7947
AT1G66670		NCLPP3, NCLPP4,...	CLP protease proteolytic subun...		Lus10000449 [exp]	22.4	0.8390

Compare expression of checked genes

Lus10012603 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.