Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46800 276 / 2e-89 ATMTP1, ZAT1, ZAT, ATCDF1 ZINC TRANSPORTER OF ARABIDOPSIS THALIANA 1, A. THALIANA CATION DIFFUSION FACILITATOR 1, zinc transporter of Arabidopsis thaliana (.1.2) AT3G58810 261 / 5e-83 ATMTPA2, MTP3, MTPA2, ATMTP3 ARABIDOPSIS METAL TOLERANCE PROTEIN 3, metal tolerance protein A2 (.1.2) AT3G61940 238 / 2e-75 ATMTPA1, MTPA1 Cation efflux family protein (.1) AT2G29410 163 / 3e-46 ATMTPB1, MTPB1 metal tolerance protein B1 (.1) AT2G04620 71 / 5e-13 Cation efflux family protein (.1) AT1G33020 68 / 3e-12 F-box and associated interaction domains-containing protein (.1) AT3G12100 49 / 4e-06 Cation efflux family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002674 [exp] 323 / 5e-108 AT3G58810 503 / 5e-179 ARABIDOPSIS METAL TOLERANCE PROTEIN 3, metal tolerance protein A2 (.1.2) Lus10030192 [exp] 229 / 7e-75 AT2G46800 221 / 1e-72 ZINC TRANSPORTER OF ARABIDOPSIS THALIANA 1, A. THALIANA CATION DIFFUSION FACILITATOR 1, zinc transporter of Arabidopsis thaliana (.1.2) Lus10040744 [exp] 166 / 3e-47 AT2G29410 344 / 1e-116 metal tolerance protein B1 (.1) Lus10016487 [exp] 165 / 7e-47 AT2G29410 345 / 8e-117 metal tolerance protein B1 (.1) Lus10004102 [exp] 76 / 1e-14 AT2G04620 784 / 0.0 Cation efflux family protein (.1) Lus10013358 [exp] 76 / 2e-14 AT2G04620 783 / 0.0 Cation efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G106200 [exp] 293 / 4e-96 AT2G46800 277 / 4e-90 ZINC TRANSPORTER OF ARABIDOPSIS THALIANA 1, A. THALIANA CATION DIFFUSION FACILITATOR 1, zinc transporter of Arabidopsis thaliana (.1.2) Potri.002G180100 [exp] 285 / 5e-93 AT2G46800 502 / 3e-178 ZINC TRANSPORTER OF ARABIDOPSIS THALIANA 1, A. THALIANA CATION DIFFUSION FACILITATOR 1, zinc transporter of Arabidopsis thaliana (.1.2) Potri.001G450900 [exp] 269 / 4e-86 AT2G46800 285 / 3e-92 ZINC TRANSPORTER OF ARABIDOPSIS THALIANA 1, A. THALIANA CATION DIFFUSION FACILITATOR 1, zinc transporter of Arabidopsis thaliana (.1.2) Potri.011G150600 [exp] 261 / 2e-83 AT3G58810 281 / 2e-91 ARABIDOPSIS METAL TOLERANCE PROTEIN 3, metal tolerance protein A2 (.1.2) Potri.001G245800 [exp] 159 / 5e-45 AT2G29410 336 / 7e-114 metal tolerance protein B1 (.1) Potri.005G110300 [exp] 77 / 6e-15 AT2G04620 483 / 2e-158 Cation efflux family protein (.1) Potri.016G045200 [exp] 46 / 3e-05 AT3G12100 536 / 0.0 Cation efflux family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01545 [flax] [poplar] Cation_efflux Cation efflux family
Representative CDS sequence Show only first row Show all	>Lus10012604 pacid=23161346 polypeptide=Lus10012604 locus=Lus10012604.g ID=Lus10012604.BGIv1.0 annot-version=v1.0 ATGGAAGACCAGGGACCAAGGCAGCGGCAGATAATTGAAATAGATGTTGATGTTCCAGGAAACAGTAATGTTGGCGGAAATAAGGTATGCGCAGAGGCAC CTTGTGGATTTTCAGATGCACAAAGCAATTCTGAAGAGGCCAAAGAACGATCAGCTTCAATCCGCAAGCTTTTGATGGCGGTCGGGTTTTGTGTACTTTT CATGACAGTTGAAGTCGTGGGAGGTATCAAAGCCAATAGTCTGGCAATATTGACTGATGCAGCACATTTACTCTCAGATGTTGCAGCATTTGCCATCTCG TTATTCTCACTTTGGACTGCTAGCTGGGAAGCCACTCCCCGCCAGTCCTATGGCTTTTTCAGAATTGAAATTCTTGGTGCATTGGTTTCCATGCAGATTA TATGGTTGCTTACAGGAATTATAGTATATGAAGCAATCGTTAGGCTCATCTATAACACAGGTCAAGTGGATGGTTTCCTAATGTTTTTGGTTTCAGCATT CGGTCTAGTAGTGAACATTATCATGGCTGTTATACTAGGACATGATCACGGACATAGTCATGGTCACGGGCACGGGCATGGACACGACCATGGTCACGGG CATGGCCATGGACACGACCACAGTCAGAGTAGTGAGCACGGGCATAGCCATGGTGATAATCACGATGTTGATGACAGCCATGGAATAATAATTAGTCATT CACATGAACATGTAGAAAATGGACACCAACATGTCCATGAAGATATCAGTGAGCCACTCATGGATAACAGGGAAAATGGGCAAAAGAAAAAGAAAAAGAA CATCAATGTTGAGGGAGCTTATCTTCATGTTCTCGGGGATTCCATTCAGAGTGTTGGGGTAATGATTGGGGGAGCAGTCATTTGGTATAAACCTGAATGG AAGATAGTTGATCTGATATGCACCCTAGTTTTCTCAGTTATAGTTATGGGCACAACAATCAAGATGCTGCGAAGCGTTCTTGAAGTGTTGATGGAGAGCA CTCCGAGAGAGATTGATGCAACAAAGCTTGAGAAGGGGGTCCTGGAGATGGAAGAAGTGATGGCCATCCATGAGCTACATATCTGGGCAATCACTGTGGG GAAGGTCCTACTAGCTTGTCATGTCAAGATTAGGCCAGATGCAAATGCGGACATGGTCCTACAAAATGTCATAAATTACATAAAAAATGAGTACAATATC AGTCACGTAACGATCCAGATAGAGGGTTAA
AA sequence Show only first row Show all	>Lus10012604 pacid=23161346 polypeptide=Lus10012604 locus=Lus10012604.g ID=Lus10012604.BGIv1.0 annot-version=v1.0 MEDQGPRQRQIIEIDVDVPGNSNVGGNKVCAEAPCGFSDAQSNSEEAKERSASIRKLLMAVGFCVLFMTVEVVGGIKANSLAILTDAAHLLSDVAAFAIS LFSLWTASWEATPRQSYGFFRIEILGALVSMQIIWLLTGIIVYEAIVRLIYNTGQVDGFLMFLVSAFGLVVNIIMAVILGHDHGHSHGHGHGHGHDHGHG HGHGHDHSQSSEHGHSHGDNHDVDDSHGIIISHSHEHVENGHQHVHEDISEPLMDNRENGQKKKKKNINVEGAYLHVLGDSIQSVGVMIGGAVIWYKPEW KIVDLICTLVFSVIVMGTTIKMLRSVLEVLMESTPREIDATKLEKGVLEMEEVMAIHELHIWAITVGKVLLACHVKIRPDANADMVLQNVINYIKNEYNI SHVTIQIEG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61940		ATMTPA1, MTPA1	Cation efflux family protein (...		Lus10012604 [exp]	0	1
AT4G10310		ATHKT1, HKT1	high-affinity K+ transporter 1...		Lus10026948 [exp]	1.0	0.8628
AT4G36250		ALDH3F1	aldehyde dehydrogenase 3F1 (.1...		Lus10031849 [exp]	5.0	0.8099
AT3G22540			Protein of unknown function (D...		Lus10010564 [exp]	5.1	0.8297
AT2G01420		PIN4, ATPIN4	ARABIDOPSIS PIN-FORMED 4, Auxi...		Lus10012680 [exp]	6.9	0.8139
					Lus10010492 [exp]	9.2	0.8116
AT1G75390	bZIP	ATBZIP44	basic leucine-zipper 44 (.1.2)		Lus10001347 [exp]	14.2	0.7974
AT5G03795			Exostosin family protein (.1)		Lus10025178 [exp]	19.2	0.7872
AT1G75800			Pathogenesis-related thaumatin...		Lus10033136 [exp]	21.5	0.7642
AT4G31950		CYP82C3	"cytochrome P450, family 82, s...		Lus10042921 [exp]	34.0	0.7270
AT1G61110	NAC	ANAC025	NAC domain containing protein ...		Lus10011215 [exp]	36.3	0.7415

Compare expression of checked genes

Lus10012604 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.