Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01410 67 / 3e-14 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G52470 47 / 6e-07 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT1G17620 47 / 1e-06 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G53730 44 / 6e-06 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G44220 42 / 2e-05 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G06330 41 / 7e-05 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G22200 39 / 0.0003 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030193 [exp] 71 / 1e-15 AT4G01410 185 / 3e-58 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10015622 [exp] 48 / 4e-07 AT1G17620 196 / 5e-62 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10037638 [exp] 47 / 1e-06 AT1G17620 201 / 4e-64 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10003824 [exp] 45 / 5e-06 AT1G17620 191 / 5e-60 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10043410 [exp] 44 / 8e-06 AT3G44220 207 / 6e-68 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10000157 [exp] 44 / 1e-05 AT3G52470 164 / 3e-51 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10004202 [exp] 43 / 2e-05 AT3G11660 257 / 8e-88 NDR1/HIN1-like 1 (.1) Lus10021286 [exp] 43 / 2e-05 AT3G52470 298 / 1e-103 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10029406 [exp] 42 / 6e-05 AT3G11660 252 / 7e-86 NDR1/HIN1-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G180000 [exp] 70 / 2e-15 AT4G01410 232 / 9e-78 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.014G106100 [exp] 70 / 2e-15 AT4G01410 185 / 7e-59 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.003G039400 [exp] 49 / 2e-07 AT1G17620 208 / 1e-66 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.016G071500 [exp] 47 / 4e-07 AT3G11660 272 / 1e-93 NDR1/HIN1-like 1 (.1) Potri.006G204200 [exp] 47 / 8e-07 AT3G11660 267 / 1e-91 NDR1/HIN1-like 1 (.1) Potri.001G200700 [exp] 46 / 2e-06 AT1G17620 168 / 2e-51 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.009G019600 [exp] 45 / 2e-06 AT3G44220 242 / 8e-82 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.018G052500 [exp] 44 / 1e-05 AT5G11890 198 / 3e-62 EMBRYO DEFECTIVE 3135, unknown protein Potri.005G088000 [exp] 43 / 2e-05 AT3G44220 194 / 5e-63 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.006G228600 [exp] 42 / 3e-05 AT5G11890 171 / 4e-52 EMBRYO DEFECTIVE 3135, unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012605 pacid=23161342 polypeptide=Lus10012605 locus=Lus10012605.g ID=Lus10012605.BGIv1.0 annot-version=v1.0 ATGGCAGAACACCATTTACCACCGGAAGACGACACCTCCGACCCAAAACACACCTCACCACCGCCACGACGTCGATCATACAGCTCCTACTACGGCCACA GCAACGTCGCCACCGCAATCACCGCCATCCTCCTAATCCTCGCCACCATCTTCCTCATCCTCTGGCTCGTCTACCGCCCCCACAAACCCACCTTCAACAT AGCAGCTGCCGCCGTCTACTCCCTCAATGTCACTACTCCTCCTTTCCTAGCCACCGCTTTCCAGTTCACCATCGTCGCCCGCAACCCCAACCGCGCGTCT CCATCCTCTACGACCACATCACCGCCTACGTCGTGTATCGCAACCAGCCAATCACCGTCCCGGTACCCCTGCCCCCGCTTCACCACCACACGAAGACAAC CGTCACCCTGTCGCCTATAA
AA sequence Show only first row Show all	>Lus10012605 pacid=23161342 polypeptide=Lus10012605 locus=Lus10012605.g ID=Lus10012605.BGIv1.0 annot-version=v1.0 MAEHHLPPEDDTSDPKHTSPPPRRRSYSSYYGHSNVATAITAILLILATIFLILWLVYRPHKPTFNIAAAAVYSLNVTTPPFLATAFQFTIVARNPNRAS PSSTTTSPPTSCIATSQSPSRYPCPRFTTTRRQPSPCRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01410			Late embryogenesis abundant (L...		Lus10012605 [exp]	0	1
					Lus10013898 [exp]	4.5	0.8962
AT2G20410			RNA-binding ASCH domain protei...		Lus10000855 [exp]	5.8	0.7924
AT1G24764		ATMAP70-2	microtubule-associated protein...		Lus10019171 [exp]	6.6	0.8397
					Lus10003840 [exp]	9.6	0.8587
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039426 [exp]	11.0	0.7761
					Lus10005396 [exp]	11.7	0.8587
					Lus10022573 [exp]	13.6	0.8587
AT1G06290		ATACX3, ACX3	acyl-CoA oxidase 3 (.1)		Lus10002177 [exp]	13.7	0.8471
					Lus10002746 [exp]	14.0	0.7614
AT2G18370			Bifunctional inhibitor/lipid-t...		Lus10001431 [exp]	15.2	0.8587

Compare expression of checked genes

Lus10012605 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.