Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01400 280 / 6e-88 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030195 [exp] 346 / 2e-113 AT4G01400 1221 / 0.0 unknown protein Lus10002677 [exp] 340 / 7e-111 AT4G01400 1222 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G179600 [exp] 294 / 4e-93 AT4G01400 1209 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0294 [flax] [poplar] Sec10 PF08318 [flax] [poplar] COG4 COG4 transport protein
Representative CDS sequence Show only first row Show all	>Lus10012607 pacid=23161338 polypeptide=Lus10012607 locus=Lus10012607.g ID=Lus10012607.BGIv1.0 annot-version=v1.0 ATGAGTCTGCCGCCAAGTATGTTTTATCAGCAGAAAGAGCAGTTAGAAGGCATTGTCAGGCAGAGGCTCTCTGCTGCGGTGGATCAGCGGGATCATCCCG CTGTTCTGAGGTTTACTCTTATCTATGCGCTTTTAGGATTGGAGGAGGAAGGGTTACAGGTCTACGTAGGGTATTTGAAGAAGATAATTTCTATCAGGTC TCGGTTTGAGTTCGATCACTTGGTGGAGTTGATGGAACAGGCTTACTCACAGCCAGGGAAACTGGCTAAGTTAACATCAGAAGGTCCTGACCTAAGAGAG GTCGAATCGTACTTGCAGGAGATTGTATCATTGATGCAAATAGGTAAAAGTTATACAGAGTTGATGATTTCCAAGATCAAAGGTTTGAGTTCTGTTGATC CGGAGTTGGTTCCAATAGCCACAAAGTCGTTTAGGAGTGGGAGCTTTTGCAAGTCAGTCCAAGGCATTAGTGGCTTTTATGAGATTTTAGAAGGATTCTT TATGGTGGAAAACGTTAGGAAAGCCATTCGGATTGATGATGTGTTCTATGTTCTGCGGAGTTGCTTGAGAAGAGCAATTTCCACCTCGAACATTAGCTCA GTTATTGCTGTCCTTATTCGTGGTGGGAGTTTGTTGAGTAATGAATGCCGAGAAGCTTTGAGGGAGCAAAACCTAGGAGAAAAATTGTTTTTGGGTGGTG TTGGTGTACAGAAGACTGGTACAGAGATTGCAGGTGCTTTGAATGATGTTGATGTTAGCAGTGAGTATGTCTTGAGGCTGAAGCACGAAATTGAGGATCA ATGTAATGAGGTATTCCCCGCCCAAGCTGATAGGGAAAAGTACCAGACTGCGCAGCAACTATTAGCTACGAGTTGTCAGAAACAGGATATGCAGGAAATG AAGTACGTAAATGACCTTTGGGTTCAGAAGCGATTGTTTACATTGGATCAGAAATCAGGAAGGTTCTCTTTTACCTCCCCTGATTTGTTTGCAACATTGG ATGCAATTAATTTTGCATCCGGATGCAGGGAGATACGTCTAACCACTTAA
AA sequence Show only first row Show all	>Lus10012607 pacid=23161338 polypeptide=Lus10012607 locus=Lus10012607.g ID=Lus10012607.BGIv1.0 annot-version=v1.0 MSLPPSMFYQQKEQLEGIVRQRLSAAVDQRDHPAVLRFTLIYALLGLEEEGLQVYVGYLKKIISIRSRFEFDHLVELMEQAYSQPGKLAKLTSEGPDLRE VESYLQEIVSLMQIGKSYTELMISKIKGLSSVDPELVPIATKSFRSGSFCKSVQGISGFYEILEGFFMVENVRKAIRIDDVFYVLRSCLRRAISTSNISS VIAVLIRGGSLLSNECREALREQNLGEKLFLGGVGVQKTGTEIAGALNDVDVSSEYVLRLKHEIEDQCNEVFPAQADREKYQTAQQLLATSCQKQDMQEM KYVNDLWVQKRLFTLDQKSGRFSFTSPDLFATLDAINFASGCREIRLTT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01400			unknown protein		Lus10012607 [exp]	0	1
AT5G04550			Protein of unknown function (D...		Lus10028839 [exp]	1.7	0.8655
AT5G62740		AtHIR4, ATHIR1	hypersensitive induced reactio...		Lus10004268 [exp]	3.0	0.8231
AT2G46220			Uncharacterized conserved prot...		Lus10012651 [exp]	3.5	0.8268
AT3G51430		SSL5, YLS2	YELLOW-LEAF-SPECIFIC GENE 2, S...		Lus10028376 [exp]	5.3	0.7976
					Lus10023092 [exp]	6.7	0.8022
AT4G15545			unknown protein		Lus10012775 [exp]	6.9	0.7950
AT2G46220			Uncharacterized conserved prot...		Lus10010135 [exp]	7.2	0.8130
AT1G08860		BON3	BONZAI 3, Calcium-dependent ph...		Lus10033826 [exp]	7.4	0.7929
AT2G22420			Peroxidase superfamily protein...		Lus10035925 [exp]	10.4	0.7897
AT2G33830			Dormancy/auxin associated fami...		Lus10025446 [exp]	13.0	0.7997

Compare expression of checked genes

Lus10012607 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.