Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00820 317 / 2e-101 IQD17 IQ-domain 17 (.1) AT1G01110 290 / 2e-91 IQD18 IQ-domain 18 (.1.2) AT4G10640 117 / 2e-28 IQD16 IQ-domain 16 (.1) AT5G03040 87 / 6e-18 IQD2 IQ-domain 2 (.1.2.3) AT3G49260 87 / 7e-18 IQD21 IQ-domain 21 (.1.2.3) AT2G26180 85 / 1e-17 IQD6 IQ-domain 6 (.1) AT3G52290 80 / 9e-16 IQD3 IQ-domain 3 (.1) AT1G72670 80 / 9e-16 IQD8 IQ-domain 8 (.1) AT4G14750 80 / 9e-16 IQD19 IQ-domain 19 (.1) AT3G49380 78 / 2e-15 IQD15 IQ-domain 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010104 [exp] 661 / 0 AT1G01110 434 / 3e-147 IQ-domain 18 (.1.2) Lus10008269 [exp] 119 / 2e-28 AT1G01110 317 / 8e-102 IQ-domain 18 (.1.2) Lus10014870 [exp] 97 / 1e-20 AT2G26180 249 / 5e-74 IQ-domain 6 (.1) Lus10006613 [exp] 83 / 2e-16 AT4G14750 295 / 6e-96 IQ-domain 19 (.1) Lus10021904 [exp] 83 / 2e-16 AT4G14750 314 / 2e-103 IQ-domain 19 (.1) Lus10013522 [exp] 82 / 3e-16 AT2G26180 403 / 2e-138 IQ-domain 6 (.1) Lus10018115 [exp] 82 / 4e-16 AT3G49260 358 / 8e-120 IQ-domain 21 (.1.2.3) Lus10023233 [exp] 78 / 1e-15 AT4G00820 126 / 1e-33 IQ-domain 17 (.1) Lus10041188 [exp] 79 / 2e-15 AT4G14750 288 / 2e-93 IQ-domain 19 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G178500 [exp] 296 / 2e-93 AT4G00820 458 / 1e-156 IQ-domain 17 (.1) Potri.014G104600 [exp] 269 / 4e-83 AT4G00820 432 / 2e-146 IQ-domain 17 (.1) Potri.001G448100 [exp] 248 / 4e-75 AT4G00820 288 / 2e-90 IQ-domain 17 (.1) Potri.011G153400 [exp] 243 / 4e-73 AT4G00820 331 / 3e-107 IQ-domain 17 (.1) Potri.012G022500 [exp] 165 / 1e-44 AT1G01110 242 / 2e-73 IQ-domain 18 (.1.2) Potri.015G005900 [exp] 136 / 2e-34 AT4G00820 277 / 1e-86 IQ-domain 17 (.1) Potri.006G226600 [exp] 100 / 3e-22 AT2G26180 386 / 1e-131 IQ-domain 6 (.1) Potri.018G062001 [exp] 87 / 3e-19 AT2G26180 260 / 2e-85 IQ-domain 6 (.1) Potri.010G218100 [exp] 90 / 8e-19 AT5G03040 323 / 8e-106 IQ-domain 2 (.1.2.3) Potri.003G042700 [exp] 86 / 7e-18 AT1G72670 223 / 3e-68 IQ-domain 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00612 [flax] [poplar] IQ IQ calmodulin-binding motif
Representative CDS sequence Show only first row Show all	>Lus10012608 pacid=23161358 polypeptide=Lus10012608 locus=Lus10012608.g ID=Lus10012608.BGIv1.0 annot-version=v1.0 ATGGGGAAGAAGGGAGGTAGCTCCTCCTCCTCTTCCTGGTTAACAGCGGTGAAAAGGGCTTTTAGATCTCCCACTAAGGACCCAACTGAAAACGACGAAG AAAAGAAAAGAGAGAAGAGGAGATGGTTATTCAGGAAACCACCCACCAGTCAAGAAACATCCCCAACCCAAAAGCCCCAACAACAAAAGCCTAATCCTCC TCCTGCACCACCATCTGCCGACCACTCTGCTGCTGAACAGAAACATGCCATTGCGGTGGCTGTCGCCACTGCAGCCACCGCTCAGGCCGCCGTAGAAGTC ACAAGGCTAGCTAGGCCTGCTGCTACCTCGTCAGCATACCACGCTAGGGAATACTACGCTGCCATTGTGATTCAAACCTCTTTTAGAGGATACCTGGCAA GGAGAGCATTGAGAGCGCTGAAAGGGCTAGTGAAGCTGCAAGCATTGGTGAGGGGACACAACGTGAGGAAGCAAGCCAAGACCACATTGCGATGTATGCA AGCTCTGGTTCGAGTCCAAGCTCGAATCCTTGATCAACGGATGCGCCTTTCCCACGATGGCTACACCCGCAAATCCACATTCAGTGACACCACCAGCCTC ATTGAGTCCCTCTACTTGCAAGACCTCTCCGACCGAAAATCTATGCAGTCTAGAGAAGGATGCAGCAATGCAGACGATTGGGACGAAAGGCCACACTCGA TTGAGGAAGTCAAAGCTATGTTGCAGCAAAGGAAAGATCATGCCGCCGCTTTGAAGCGTGAAAAGCACTTCTCCTCTCAGGAAAAGGTATGGAGGAATGG GAGGAGTCCATCGGTAGGAAGCGAGGCGGAGATCCAAGAAAAGCCACAATGGCTTGATAGATTGATGATGGTTTCTTCAAAGCCAAGGGATAGTAGTAAC AGTAGAGGCAGAGCTTCAACTGACCATCGAGGAGATCCAATCAAGACCGTCGAAATCGACGCGTCATCTCAACCGTACTCCTCCAGAAGACTGTCAACGA CTCAAAGCTACCACCAGAGACCGAGTTCCCCAAGCAGATCCTATCCGACGCCGCCGTTTCACCATCACCCAACCCCCCGCGCCGTCACGCCTTCTTCTCC GTCCAGATCCAGACCGGTCCAGGTTCGGTCAGCCAGTCCTAGATCTTGCGTGAGGGAAGAAGACGGCAGGAGAAGCTACGCTTCGTCACAGACTCCTAGC CTCAGGTCCAATTACCACTACACCGGAAGTCTATTAAATCATCATCATCATCATCAATATGGAGTAGTTAGGAATTCGAACAATACATCGGCTGCCGCGA CGGCCGCGTTGCCTAATTACATGGCGGCGACGGAATCGGCGAGGGCAAGATCGAGATCGCAGAGCGCGCCGAGGCAGAGGCCGTCTACGCCGGAACGGGA TGGGGGAAACAGAGGAGGAGGAGGTGGTGGTGGTGGTGGTGGAAGTTGTGCGAAGAAGAGGTTGTCGTTTCCGGTGCCGGACCAATGGTCGTTGAGGAGC CCGAGTTTTAAGAGCGTGAGCAGCAGCGCGTATTACGGTGGGTTGGAGCAGCTATCCAATTACTCCTCGTGCTATACGGAGAGTGTGATTGGATGCGGCG TCGGAGGCGGTGAGGTTTCGCCTTCTTCAACCGGCGATCTCAGGCGTTGGTTGAGGTGA
AA sequence Show only first row Show all	>Lus10012608 pacid=23161358 polypeptide=Lus10012608 locus=Lus10012608.g ID=Lus10012608.BGIv1.0 annot-version=v1.0 MGKKGGSSSSSSWLTAVKRAFRSPTKDPTENDEEKKREKRRWLFRKPPTSQETSPTQKPQQQKPNPPPAPPSADHSAAEQKHAIAVAVATAATAQAAVEV TRLARPAATSSAYHAREYYAAIVIQTSFRGYLARRALRALKGLVKLQALVRGHNVRKQAKTTLRCMQALVRVQARILDQRMRLSHDGYTRKSTFSDTTSL IESLYLQDLSDRKSMQSREGCSNADDWDERPHSIEEVKAMLQQRKDHAAALKREKHFSSQEKVWRNGRSPSVGSEAEIQEKPQWLDRLMMVSSKPRDSSN SRGRASTDHRGDPIKTVEIDASSQPYSSRRLSTTQSYHQRPSSPSRSYPTPPFHHHPTPRAVTPSSPSRSRPVQVRSASPRSCVREEDGRRSYASSQTPS LRSNYHYTGSLLNHHHHHQYGVVRNSNNTSAAATAALPNYMAATESARARSRSQSAPRQRPSTPERDGGNRGGGGGGGGGGSCAKKRLSFPVPDQWSLRS PSFKSVSSSAYYGGLEQLSNYSSCYTESVIGCGVGGGEVSPSSTGDLRRWLR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01110		IQD18	IQ-domain 18 (.1.2)		Lus10012608 [exp]	0	1
AT2G38620		CDKB1;2	cyclin-dependent kinase B1;2 (...		Lus10035614 [exp]	1.0	0.9312
AT3G54750			unknown protein		Lus10016201 [exp]	4.5	0.9269
AT2G02130		PDF2.3, LCR68	low-molecular-weight cysteine-...		Lus10004290 [exp]	5.5	0.8910
AT5G67270		ATEB1C, ATEB1H1	ATEB1-HOMOLOG1, MICROTUBULE EN...		Lus10019316 [exp]	12.0	0.9244
AT2G38620		CDKB1;2	cyclin-dependent kinase B1;2 (...		Lus10003236 [exp]	12.0	0.9132
AT3G54250			GHMP kinase family protein (.1...		Lus10043438 [exp]	15.0	0.8516
AT5G25380		CYCA2;1	cyclin a2;1 (.1)		Lus10013140 [exp]	15.2	0.9243
AT4G29000	CPP		Tesmin/TSO1-like CXC domain-co...		Lus10011693 [exp]	16.2	0.8516
AT1G78560			Sodium Bile acid symporter fam...		Lus10005565 [exp]	16.5	0.8437
AT1G06660		JASON	JASON, unknown protein		Lus10020732 [exp]	24.7	0.9064

Compare expression of checked genes

Lus10012608 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.