Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46760 595 / 0 D-arabinono-1,4-lactone oxidase family protein (.1) AT2G46750 573 / 0 D-arabinono-1,4-lactone oxidase family protein (.1) AT2G46740 555 / 0 D-arabinono-1,4-lactone oxidase family protein (.1) AT5G56490 554 / 0 D-arabinono-1,4-lactone oxidase family protein (.1) AT1G32300 551 / 0 D-arabinono-1,4-lactone oxidase family protein (.1) AT5G11540 367 / 2e-121 D-arabinono-1,4-lactone oxidase family protein (.1) AT5G56470 333 / 1e-112 FAD-dependent oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010105 [exp] 788 / 0 AT2G46760 709 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10012610 [exp] 619 / 0 AT2G46760 761 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10002688 [exp] 465 / 1e-159 AT2G46760 674 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10030206 [exp] 457 / 2e-156 AT2G46760 657 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10004735 [exp] 455 / 1e-155 AT2G46760 653 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10038620 [exp] 372 / 5e-123 AT5G11540 732 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10010107 [exp] 228 / 3e-72 AT2G46760 262 / 2e-84 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10007795 [exp] 142 / 6e-36 AT5G47380 562 / 0.0 Protein of unknown function, DUF547 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G178400 [exp] 591 / 0 AT2G46760 809 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Potri.002G178300 [exp] 589 / 0 AT2G46760 785 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Potri.018G039600 [exp] 387 / 3e-129 AT5G11540 771 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0277 [flax] [poplar] FAD-oxidase_C PF04030 [flax] [poplar] ALO D-arabinono-1,4-lactone oxidase
Representative CDS sequence Show only first row Show all	>Lus10012609 pacid=23161382 polypeptide=Lus10012609 locus=Lus10012609.g ID=Lus10012609.BGIv1.0 annot-version=v1.0 ATGCTCCTCCCCAAACAACACCAACTGCACAATCACCAACACCTACGGCGCCTTCCCCGACCTATCCACGTGTCGCGCATCCCGCGTGGCATACCCCACC ACGCAGCAAGAGCTGATCCCCACGATCGGCGGACCAACCCAAGCTCGCCGGACTCGCCGTATTGGTGGGGGTTGACTGTCGGAGGAATGCTTGGGACTGG GGCCCACGGGAGTAGTCTTTGGCGGGCGGAAGGTACAGCTGTGCATGATTTTGTGGTGGAGATGACGGTGGTGAGTCCGGGGGATGTCTCCGATGGATAT GTGAAGGTGAGGACGTTGAAGGAGAGGGATAGTGATATCAATGCTGCCAAGGTCTCCCTCGGTGTTCTTGGGGTTGTCTCTAAGGTGACTTTCAAACTTG AATCGATGTTCAAAAGATCTGTAACTTTCGTGATGAGGAATGATTCGGATTTTGGAGATGAATCAACCAAGTTTGGACTCCAACACGAGTTTGCAGATTT CTCATGGTATCCCAGTCAGAGTAGAATTGTTTATCGAATCGACGATCGAGTGCCTTCGAACACTACCGGAAACGGCTTAAACGACTATATCCCTTTCCGA TCTACGTCATCACTCCTGTTGGGAGCCGTCAGAACCGCAGAGGAAGCGCAGGAATTTTTCAAAGACAGTAACGGCAAATGCGTCAGCGGCAGGCTCACCA CGGCCACACTCCGCACCGCCGCCTTCGGACTAACCAACAACGGGTTCATCTTCACCGGCTACCCAATTATCGGCTTCCAAAACCGCCTCCAATCCTCCGG GTCATGCCTCGACAGCTCGAACGACGGTTTCATCACAGCATGCGCTTGGGATTCACGAATCAGGGCCGAGTACTTCCACCAAACCACCTTTAGCGTCGCT CTCTCCGTCGTAAAAGACTTCATCCTCGACATCCAAAAGCTCGTAACCCTAGACCCGGACACGTTATGCATGCTAGACCAATACAACGGCATCCTCATGC GATATGTCAAGGGGTCAACTGCCTATTTGGGGAAGCAAGAGGACGGGTTGGACTTTGACATTACGTACTATAGAAGCAAAGACCCCATGCAGCCGAGGTT GTACCAGGACGTGTTGGAGGAGATCGAGCAGATGGCTATGTTTAAGTACGGAGCTTTGCCGCATTGGGGCAAGAATCGAAACTTGGCGTTTGTCGGGGCG ATTGATAGGTATGAGAAGAGTGGGGAGTTTTTGAAGGTTAAGGAGAGGTTTGATCCGTTGGGGTTGTTTTCGAGCGAGTGGACCGATAAGGTTCTTGGGT TGAGAGGTGGGTTGACTACGTTGGAGGATGGGTGTGCTTTGGAAGGTATGTGTATATGTTCGGAGGATGCTCATTGTGCGCCTAAGGATGGATACTTTTG TAGGCCGGGGAAAGTTTACAAGGATGCTAGGGTTTGTACTTATATTGATGACTCTACTTATTAA
AA sequence Show only first row Show all	>Lus10012609 pacid=23161382 polypeptide=Lus10012609 locus=Lus10012609.g ID=Lus10012609.BGIv1.0 annot-version=v1.0 MLLPKQHQLHNHQHLRRLPRPIHVSRIPRGIPHHAARADPHDRRTNPSSPDSPYWWGLTVGGMLGTGAHGSSLWRAEGTAVHDFVVEMTVVSPGDVSDGY VKVRTLKERDSDINAAKVSLGVLGVVSKVTFKLESMFKRSVTFVMRNDSDFGDESTKFGLQHEFADFSWYPSQSRIVYRIDDRVPSNTTGNGLNDYIPFR STSSLLLGAVRTAEEAQEFFKDSNGKCVSGRLTTATLRTAAFGLTNNGFIFTGYPIIGFQNRLQSSGSCLDSSNDGFITACAWDSRIRAEYFHQTTFSVA LSVVKDFILDIQKLVTLDPDTLCMLDQYNGILMRYVKGSTAYLGKQEDGLDFDITYYRSKDPMQPRLYQDVLEEIEQMAMFKYGALPHWGKNRNLAFVGA IDRYEKSGEFLKVKERFDPLGLFSSEWTDKVLGLRGGLTTLEDGCALEGMCICSEDAHCAPKDGYFCRPGKVYKDARVCTYIDDSTY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46760			D-arabinono-1,4-lactone oxidas...		Lus10012609 [exp]	0	1
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10030462 [exp]	2.4	0.9496
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10032641 [exp]	8.9	0.9435
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Lus10043313 [exp]	10.2	0.9425
AT2G01170		BAT1	bidirectional amino acid trans...		Lus10029533 [exp]	18.8	0.9379
AT1G34300			lectin protein kinase family p...		Lus10012659 [exp]	22.6	0.9325
AT3G26270		CYP71B25	"cytochrome P450, family 71, s...		Lus10019463 [exp]	26.3	0.9276
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10037585 [exp]	27.7	0.9362
AT4G11650		ATOSM34	osmotin 34 (.1)		Lus10024511 [exp]	28.1	0.9315
AT4G29700			Alkaline-phosphatase-like fami...		Lus10000041 [exp]	31.0	0.9306
AT2G37770		ChlAKR, AKR4C9	Chloroplastic aldo-keto reduct...		Lus10010885 [exp]	31.5	0.9340

Compare expression of checked genes

Lus10012609 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.