Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46760 761 / 0 D-arabinono-1,4-lactone oxidase family protein (.1) AT2G46750 736 / 0 D-arabinono-1,4-lactone oxidase family protein (.1) AT5G56490 725 / 0 D-arabinono-1,4-lactone oxidase family protein (.1) AT2G46740 724 / 0 D-arabinono-1,4-lactone oxidase family protein (.1) AT1G32300 720 / 0 D-arabinono-1,4-lactone oxidase family protein (.1) AT5G11540 443 / 7e-151 D-arabinono-1,4-lactone oxidase family protein (.1) AT5G56470 347 / 5e-118 FAD-dependent oxidoreductase family protein (.1) AT3G47930 47 / 2e-05 ATGLDH "L-galactono-1,4-lactone dehydrogenase", L-galactono-1,4-lactone dehydrogenase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010105 [exp] 771 / 0 AT2G46760 709 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10012609 [exp] 675 / 0 AT2G46760 642 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10002688 [exp] 603 / 0 AT2G46760 674 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10030206 [exp] 595 / 0 AT2G46760 657 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10004735 [exp] 594 / 0 AT2G46760 653 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10038620 [exp] 452 / 4e-154 AT5G11540 732 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10010106 [exp] 112 / 4e-29 AT2G46760 190 / 4e-58 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10007795 [exp] 152 / 2e-23 AT5G47380 562 / 0.0 Protein of unknown function, DUF547 (.1) Lus10035411 [exp] 52 / 6e-07 AT3G47930 939 / 0.0 "L-galactono-1,4-lactone dehydrogenase", L-galactono-1,4-lactone dehydrogenase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G178300 [exp] 781 / 0 AT2G46760 785 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Potri.002G178400 [exp] 771 / 0 AT2G46760 809 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Potri.018G039600 [exp] 466 / 1e-159 AT5G11540 771 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Potri.016G040300 [exp] 51 / 2e-06 AT3G47930 794 / 0.0 "L-galactono-1,4-lactone dehydrogenase", L-galactono-1,4-lactone dehydrogenase (.1.2) Potri.016G064800 [exp] 47 / 2e-05 AT5G06580 885 / 0.0 FAD-linked oxidases family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [flax] [poplar] FAD_PCMH PF01565 [flax] [poplar] FAD_binding_4 FAD binding domain CL0277 [flax] [poplar] FAD-oxidase_C PF04030 [flax] [poplar] ALO D-arabinono-1,4-lactone oxidase
Representative CDS sequence Show only first row Show all	>Lus10012610 pacid=23161340 polypeptide=Lus10012610 locus=Lus10012610.g ID=Lus10012610.BGIv1.0 annot-version=v1.0 ATGAAAGTTGCCACAAGATACTCCCACAGCATCCCCAAGCTGGTCTGCCCCGACGGCGACGATGGGATCCTCATAAGCACCAAGTTCCTCAACCGGGTGT TGGCCGTAGACACGGCGGCGATGACGATGAGCGTGGAAAGCGGGGTGACGCTGCGGCAGCTGATGGAAGACGCCGCTAAGGTAGAGATGGCGCTGCCGTA CACGCCGTACTGGTGGGGGTTGACCGTCGGAGGAATGCTGGGGACTGGGGCCCACGGGAGCAGTCTTTGGGGAGGGAGTGCGATTCATGACTATGTTGTT GAGTTGACGGTGGTCAGTCCGGGGAGAGCCGCCGATGGGTTTGTGAAGGTTAGGACGTTGAAAGAAAGTAACGGTGAAATTAATGCGGCCAAGGTATCCC TCGGCGTCCTCGGAGTTATTTCTAAGGTGACTCTGAAACTACAACCATTGTTCAAACGATCCCTAACCTATGTGGAAAAAGATGACAAAGATTTCGCAGA TGAAGCAGTTACCTTCGGACGCAAACATGAGTTTGCAGACTTTTCTTGGTTTCCAAGTCAGGGTAAAGTCATCTACAGAATAGACGACCGCGTTCCTTCC AATACCTCAGGGAATGGCAATAACGATTTCATTCCTTTTCGCTCCACTCTCTCCCTCGGTTTGGCCATCATCAGAACCGCAGAGGAAACTCAAGAATCTA CGAAGGCGGCCAGCGCGAAATGTGCGAGTGGGAAGCTCCGGTCATCGACACTCAAAACGACAGGCTTCGGAATAACCAACAACGGGCTCATCTTCACCGG CTACCCGATAATCGGCTACCACAACCGTCTCCAAGCGTCGGGGACGTGTTTAGACAGTCCCAACGACGGGCTAATCACTGCATGCCCATGGGATTCGAGG GTCAAAGGAGAATTCTTCCACCAGACCACCTTCAGCATCTCCCTAACCAAGGTTAAAGACTTCATCCGCGACATCCAAACTCTCGTAAACCAAGATCGTA AATCTCTTTGTGTGCTCGATCAATACAACGGCATCCTCATTCGATATGTCACCTCGTCGAGTGCGTACTTGGGCAAGCAGGAGGATGCATTGGACTTTGA CTTGACGTATTACAGAAGTAATGACCCTATGAAGCCGAGGCTGTACGAAGACGTGTTGGAGGAGATCGAGCAGATGGCTGTGTTCAAGTATGGAGCTTTG CCGCATTGGGGGAAAAATAGGAACTTGGTGTTTGATGGAGTTCTGAACAAGTACAGAAATGGTGGGGAGTTTTTGAAAGTGAAGAGTAAGTATGATCCGT TGGGGTTGTTTTCGAGCGAGTGGACCGATCAAGTTCTTGGGTTGAAAGATGGTGTGAGCATCGTGAAGGATGGTTGTGCTTTGGAAGGGTTGTGTGTGTG TTTTGAAGATAGTCATTGTGCACCCAGCAAGGGCTATTTGTGTAGAGCTGGAAAGGTTTATACAGATGCAAGGGTTTGTAGCAGCAACAGATCCACCGAT TCTAATTAA
AA sequence Show only first row Show all	>Lus10012610 pacid=23161340 polypeptide=Lus10012610 locus=Lus10012610.g ID=Lus10012610.BGIv1.0 annot-version=v1.0 MKVATRYSHSIPKLVCPDGDDGILISTKFLNRVLAVDTAAMTMSVESGVTLRQLMEDAAKVEMALPYTPYWWGLTVGGMLGTGAHGSSLWGGSAIHDYVV ELTVVSPGRAADGFVKVRTLKESNGEINAAKVSLGVLGVISKVTLKLQPLFKRSLTYVEKDDKDFADEAVTFGRKHEFADFSWFPSQGKVIYRIDDRVPS NTSGNGNNDFIPFRSTLSLGLAIIRTAEETQESTKAASAKCASGKLRSSTLKTTGFGITNNGLIFTGYPIIGYHNRLQASGTCLDSPNDGLITACPWDSR VKGEFFHQTTFSISLTKVKDFIRDIQTLVNQDRKSLCVLDQYNGILIRYVTSSSAYLGKQEDALDFDLTYYRSNDPMKPRLYEDVLEEIEQMAVFKYGAL PHWGKNRNLVFDGVLNKYRNGGEFLKVKSKYDPLGLFSSEWTDQVLGLKDGVSIVKDGCALEGLCVCFEDSHCAPSKGYLCRAGKVYTDARVCSSNRSTD SN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46760			D-arabinono-1,4-lactone oxidas...		Lus10012610 [exp]	0	1
					Lus10008049 [exp]	10.8	0.8510
AT1G48120			hydrolases;protein serine/thre...		Lus10008569 [exp]	15.2	0.8510
					Lus10024550 [exp]	18.7	0.8510
AT1G26480		GF14IOTA, GRF12	general regulatory factor 12 (...		Lus10026660 [exp]	21.5	0.8510
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Lus10028619 [exp]	24.1	0.8510
					Lus10034512 [exp]	26.4	0.8510
AT5G52020	AP2_ERF		Integrase-type DNA-binding sup...		Lus10031652 [exp]	26.7	0.7949
AT1G22260		AtZYP1a, ZYP1a	Myosin heavy chain-related pro...		Lus10019419 [exp]	28.5	0.8510
AT5G52020	AP2_ERF		Integrase-type DNA-binding sup...		Lus10024492 [exp]	29.9	0.6964
AT4G03230			S-locus lectin protein kinase ...		Lus10036313 [exp]	30.5	0.8510

Compare expression of checked genes

Lus10012610 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.