Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01180 181 / 3e-58 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010109 [exp] 214 / 4e-71 AT1G01180 397 / 1e-139 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10013195 [exp] 149 / 2e-45 AT1G01180 353 / 2e-122 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10030709 [exp] 148 / 3e-45 AT1G01180 350 / 3e-121 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G177500 [exp] 196 / 4e-64 AT1G01180 383 / 4e-134 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.014G103800 [exp] 192 / 7e-63 AT1G01180 373 / 2e-130 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012612 pacid=23161343 polypeptide=Lus10012612 locus=Lus10012612.g ID=Lus10012612.BGIv1.0 annot-version=v1.0 ATGCAGAACGCGGCGTACAGCAACTCGACCGGGTCGGTTCTGCCCGTGCCGTTCTCGTCCGGGTCGGCGCTGCAGAAGCTGTGTGAGTGGAGGGTGTACG GGGATTTGATAAAGATCGATGCTGGTCATGATTTTAACTCGGCTTGGGCGGATATAAACCGGGCGTACCGGATATTGAGACCCGGTGGAGTCATATTCGG GCATGATTATTTTACGGTGGCGGATAATAGGGGTGTGAGAAGGGCGGTAAATCTGTTTGCACAAATGAATGGGCTGAAAGTGAGAGCTGATAGTCAACAT TGGGTCATTGACTCTTAG
AA sequence Show only first row Show all	>Lus10012612 pacid=23161343 polypeptide=Lus10012612 locus=Lus10012612.g ID=Lus10012612.BGIv1.0 annot-version=v1.0 MQNAAYSNSTGSVLPVPFSSGSALQKLCEWRVYGDLIKIDAGHDFNSAWADINRAYRILRPGGVIFGHDYFTVADNRGVRRAVNLFAQMNGLKVRADSQH WVIDS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01180			S-adenosyl-L-methionine-depend...		Lus10012612 [exp]	0	1
AT1G29450			SAUR-like auxin-responsive pro...		Lus10007057 [exp]	1.4	0.6787
AT3G18170			Glycosyltransferase family 61 ...		Lus10032454 [exp]	29.1	0.6120
AT2G26490			Transducin/WD40 repeat-like su...		Lus10032868 [exp]	30.0	0.6120
AT2G24370			Protein kinase protein with ad...		Lus10027593 [exp]	30.9	0.6120
AT5G02910			F-box/RNI-like superfamily pro...		Lus10000727 [exp]	31.7	0.6120
AT3G08030			Protein of unknown function, D...		Lus10029502 [exp]	32.6	0.6120
AT1G30700			FAD-binding Berberine family p...		Lus10031080 [exp]	33.4	0.6120
					Lus10039674 [exp]	34.1	0.6120
					Lus10021739 [exp]	34.9	0.6120
					Lus10004437 [exp]	35.7	0.6120

Compare expression of checked genes

Lus10012612 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.