Plant FIBer expression Database

Lus10012616 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G46630 53 / 5e-08 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005994
[exp]
76 / 2e-15 AT2G46630 / unknown protein
Lus10030217
[exp]
72 / 3e-14 AT2G46630 51 / 1e-06 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G102466
[exp]
64 / 2e-11 AT2G46630 114 / 1e-27 unknown protein
Potri.002G175400
[exp]
54 / 2e-08 AT2G46630 107 / 3e-25 unknown protein
PFAM info
Representative CDS sequence
>Lus10012616 pacid=23161353 polypeptide=Lus10012616 locus=Lus10012616.g ID=Lus10012616.BGIv1.0 annot-version=v1.0
ATGTCAAACCAGCAGCAACCTACTTGGCCCCGTCCCAGCTGGTTCCGCGCTGCTTCCCTTACTCGCCCCCTCTCTCAAACTCCGGCTCCATCTTCGCCGC
CGGTGATTCCAACCAGCCGCAGTAATGTTGCATTTTCTCGTCCCTCCTCTGCTCGTCTGGCATTTCCACCTCCCACTTCTTCGCTTCCACCTTCCTCTGT
AGTTAAACCGGCGCCGCCGAAGCTAGTGGGCTCCACTTCTCCAGTCAGCAAATTACATCCAGCCACGTCTTCGATTCCAAATTATCCCAAGTCTGAACCA
GCTGCATTGAAGAATTTCTCGGTGCCTTCTCCCGAAGCCCCACTTCAATTGCCAGACACAAAGCCTACCGCTCAGCAACCGCCGTCCCAATTTAAACCCA
AATTCTTATCGGAGGGAGGGGAGGAAACCCTAGTGGCACGGAAGATGGAGGAGAATAATCCTTTGGACGTGAGTATCATCACCCTCGCCGGAGATAACAG
GGGAGCCGCCATGGGATTGTTCCGATCTCCCGGGAAGTTGGGAAATCTTGAAACAACGAGAGGAAACAGCAGCGGAAGTGGAGAAGAAGGCGAAGGGGAG
AGGAAGAGCAAGGCAGAGAGGAGGATAGGAGGATGGGGAAGAAGAGGGAAAGGCGGGGTAATAGTGAACAGTAACGTACAAGGGATTAACAACTCCATCA
TCTTCGATTCTTGCTGCGACTACTATGATCCTGGTGTCCATCTCACTCTCTAG
AA sequence
>Lus10012616 pacid=23161353 polypeptide=Lus10012616 locus=Lus10012616.g ID=Lus10012616.BGIv1.0 annot-version=v1.0
MSNQQQPTWPRPSWFRAASLTRPLSQTPAPSSPPVIPTSRSNVAFSRPSSARLAFPPPTSSLPPSSVVKPAPPKLVGSTSPVSKLHPATSSIPNYPKSEP
AALKNFSVPSPEAPLQLPDTKPTAQQPPSQFKPKFLSEGGEETLVARKMEENNPLDVSIITLAGDNRGAAMGLFRSPGKLGNLETTRGNSSGSGEEGEGE
RKSKAERRIGGWGRRGKGGVIVNSNVQGINNSIIFDSCCDYYDPGVHLTL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G75260 oxidoreductases, acting on NAD... Lus10012616
[exp]
0 1
AT5G65520 Tetratricopeptide repeat (TPR)... Lus10016283
[exp]
6.9 0.7194
AT5G54590 CRLK1 calcium/calmodulin-regulated r... Lus10043083
[exp]
11.5 0.7297
AT4G20960 Cytidine/deoxycytidylate deami... Lus10037850
[exp]
11.6 0.6897
AT2G07180 Protein kinase superfamily pro... Lus10040588
[exp]
12.0 0.7104
AT4G01897 unknown protein Lus10038061
[exp]
19.1 0.7061
AT5G66090 unknown protein Lus10028414
[exp]
19.4 0.7131
AT1G45616 AtRLP6 receptor like protein 6 (.1) Lus10003389
[exp]
21.2 0.6819
AT3G27100 unknown protein Lus10012534
[exp]
21.8 0.7168
Lus10028090
[exp]
25.4 0.7114
Lus10038131
[exp]
33.2 0.6808

Lus10012616 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.