Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61870 320 / 2e-110 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010112 [exp] 441 / 9e-158 AT3G61870 364 / 7e-128 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G102400 [exp] 332 / 6e-115 AT3G61870 287 / 2e-97 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012617 pacid=23161385 polypeptide=Lus10012617 locus=Lus10012617.g ID=Lus10012617.BGIv1.0 annot-version=v1.0 ATGGCTACCACACTCAACCTTCTCAAATCCTCTCTTCTCCCCAGTCATCGTCGTCATTACCATCATCGTCTTCACTCCCACCGCTATGTTCCACAATGTA TCAACTCCAATTCACCACGCACACTCTCAGACACCATCACTATTACTAACCTCAAGAAGAAGCTCATCCCTGACGCCGTTACCCATCTGAGTTCTGCTTC TCTGCCGCTCGCAGCAGCCACATTGCCTTTCTTCCTCGATGCCAAGGATGCTTTTGCGGTGGGAGGGGAATTGGGGATATTGGAAGGGAGGAGTTTGGCA CTTGTTCACCCGATCGTCATGGGTGGGCTGTTCTTCTACACATTGTGGGCTGGTTATTTGGGGTGGCAATGGAGACGGGTTAGAACTATACAGAGCGAAA TCACTGAGCTTAAGAAGCAAGTGAAGCCTGCCGCTGTTGCCCCTGATGGTACACCTATTAAATCCCCTCCTTCCCCTGTTGAAGCCAAAATTCAGCAGCT CACCGAGGAGAGGAAAGAGTTGGTGAAAGGAGGGTTTAGGGACAAGCATCATGATGCTGGAGCTATTTTGCTTGGATTCGGAGTGCTTGAGTCAGTCGGG GGTGGTCTCAACACCTGGTTTAGGACTGGAAAGCTTTTCCCTGGCCCTCATTTATATGCTGGAGCAGGAATTACAGTGTTGTGGGCGCTGGCAGCAGCTT TAGTACCAGCAATGCAGAGAGGGAATGAAACGGCGAGAAACCTTCACATTGCCTTGAACGTAGTCAACGTTTTGCTGTTTGTGTGGCAAATCCCTACTGG ACTCGACATTGTTCTCAAGGTATTTGAGTTCACTAAATGGCCATGA
AA sequence Show only first row Show all	>Lus10012617 pacid=23161385 polypeptide=Lus10012617 locus=Lus10012617.g ID=Lus10012617.BGIv1.0 annot-version=v1.0 MATTLNLLKSSLLPSHRRHYHHRLHSHRYVPQCINSNSPRTLSDTITITNLKKKLIPDAVTHLSSASLPLAAATLPFFLDAKDAFAVGGELGILEGRSLA LVHPIVMGGLFFYTLWAGYLGWQWRRVRTIQSEITELKKQVKPAAVAPDGTPIKSPPSPVEAKIQQLTEERKELVKGGFRDKHHDAGAILLGFGVLESVG GGLNTWFRTGKLFPGPHLYAGAGITVLWALAAALVPAMQRGNETARNLHIALNVVNVLLFVWQIPTGLDIVLKVFEFTKWP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61870			unknown protein		Lus10012617 [exp]	0	1
AT1G73060		LPA3	Low PSII Accumulation 3 (.1)		Lus10002315 [exp]	1.0	0.9729
AT1G60950		FED A, ATFD2, F...	FERREDOXIN 2, 2Fe-2S ferredoxi...		Lus10015462 [exp]	2.4	0.9565
AT1G60950		FED A, ATFD2, F...	FERREDOXIN 2, 2Fe-2S ferredoxi...		Lus10001369 [exp]	2.8	0.9493
AT3G16000		MFP1	MAR binding filament-like prot...		Lus10025768 [exp]	4.0	0.9289
AT4G34190		SEP1	stress enhanced protein 1 (.1)		Lus10002821 [exp]	4.2	0.9432
AT1G61520		LHCA3*1, LHCA3*...	photosystem I light harvesting...		Lus10016074 [exp]	4.9	0.9517
AT5G18660		PCB2, DVR	PALE-GREEN AND CHLOROPHYLL B R...		Lus10038638 [exp]	6.9	0.9355
AT1G55670		PSAG	photosystem I subunit G (.1)		Lus10028806 [exp]	7.1	0.9491
AT4G20360		AtRab8D, AtRABE...	RAB GTPase homolog E1B (.1)		Lus10019493 [exp]	7.3	0.9372
AT4G37380			Tetratricopeptide repeat (TPR)...		Lus10000110 [exp]	7.7	0.9293

Compare expression of checked genes

Lus10012617 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.