Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00895 77 / 3e-17 ATPase, F1 complex, OSCP/delta subunit protein (.1) AT4G09650 61 / 6e-11 PDE332, ATPD PIGMENT DEFECTIVE 332, ATP synthase delta-subunit gene (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020508 [exp] 50 / 3e-07 AT4G09650 248 / 5e-83 PIGMENT DEFECTIVE 332, ATP synthase delta-subunit gene (.1) Lus10012452 [exp] 50 / 5e-07 AT4G09650 250 / 5e-84 PIGMENT DEFECTIVE 332, ATP synthase delta-subunit gene (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G102100 [exp] 140 / 1e-40 AT4G09650 90 / 3e-21 PIGMENT DEFECTIVE 332, ATP synthase delta-subunit gene (.1) Potri.019G087300 [exp] 74 / 2e-15 AT4G09650 227 / 9e-75 PIGMENT DEFECTIVE 332, ATP synthase delta-subunit gene (.1) Potri.013G117000 [exp] 53 / 3e-08 AT4G09650 247 / 8e-83 PIGMENT DEFECTIVE 332, ATP synthase delta-subunit gene (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0255 [flax] [poplar] ATP_synthase PF00213 [flax] [poplar] OSCP ATP synthase delta (OSCP) subunit
Representative CDS sequence Show only first row Show all	>Lus10012618 pacid=23161377 polypeptide=Lus10012618 locus=Lus10012618.g ID=Lus10012618.BGIv1.0 annot-version=v1.0 ATGGAAACCCTCTCAGGCTCCGTTTCCAACTTCAGGGTTCCCTCCCTTCATCCTCCACCTCGTGACATCCACACCTTCAAAACTCCCAACGCATCTCTCC ACCACCGGCACCCGTCGCCACATCACCACCACCACCTCTCCACAAAACCCAAATCCCAATCGGCGGCTCCGGCTTCCCGAACATCTTCCCCAACCTTATC TCTTCGCACCACAAATTCTACTTCCGTACAAGCAGCTGCCTTTTCTCCTCCAAACACGCACCGACGTCCTGCTAGCGGCTACGCCGCGGCTCTAGTGGAC ATAGCACACTGCAAGGGCGCTCTCGACGCAGTACAGAAAGACGCTCGACGGCTGTCCAGACTCCTGAGGAACGAACAGATTCGTATCTTTTTACGGGACC CGTTAATGGGGAGTGAAGAGAAAGGAGGGTTGGTTGAGGAACTCGGGAAGAGAAGAAGAATCGGCGAGCTATTGATGAGTTTGGTGAAGATGTTGATTGG GAGAAACAGGGTTGGGATTTTGCAGGAGGTGTTGATGGAATTCGAGAGGATTTGTGATGAGATGATTGGGACTCAGCGGGTTCTGGTTTCTTCTACGGGG AAGAAGATGGATGAAGGTGAGATGCTTCGAATTGCTCGGACTGTGCAGGAATCAAGTGGAGGTAAGAAAGTCAAAATCAGGAATTTTATTCACGAGAATG GAGGATTTTCTCCTTCCCTTGCACTGTAA
AA sequence Show only first row Show all	>Lus10012618 pacid=23161377 polypeptide=Lus10012618 locus=Lus10012618.g ID=Lus10012618.BGIv1.0 annot-version=v1.0 METLSGSVSNFRVPSLHPPPRDIHTFKTPNASLHHRHPSPHHHHHLSTKPKSQSAAPASRTSSPTLSLRTTNSTSVQAAAFSPPNTHRRPASGYAAALVD IAHCKGALDAVQKDARRLSRLLRNEQIRIFLRDPLMGSEEKGGLVEELGKRRRIGELLMSLVKMLIGRNRVGILQEVLMEFERICDEMIGTQRVLVSSTG KKMDEGEMLRIARTVQESSGGKKVKIRNFIHENGGFSPSLAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00895			ATPase, F1 complex, OSCP/delta...		Lus10012618 [exp]	0	1
AT3G21750		UGT71B1	UDP-glucosyl transferase 71B1 ...		Lus10026795 [exp]	1.7	0.9436
AT3G47070			unknown protein		Lus10040689 [exp]	2.4	0.9410
AT2G35490			Plastid-lipid associated prote...		Lus10035384 [exp]	3.5	0.9293
AT1G53670		MSRB1, ATMSRB1	methionine sulfoxide reductase...		Lus10013727 [exp]	3.5	0.9363
AT2G05620		PGR5	proton gradient regulation 5 (...		Lus10011777 [exp]	6.7	0.9298
AT1G77090			Mog1/PsbP/DUF1795-like photosy...		Lus10028633 [exp]	7.1	0.9259
AT4G25130		PMSR4	peptide met sulfoxide reductas...		Lus10032504 [exp]	7.3	0.9268
AT3G58070	C2H2ZnF	GIS	GLABROUS INFLORESCENCE STEMS, ...		Lus10016238 [exp]	7.4	0.9247
AT5G57345			unknown protein		Lus10001632 [exp]	7.5	0.9317
AT5G24930	CO	COL4, ATCOL4	CONSTANS-like 4 (.1)		Lus10026238 [exp]	7.9	0.9284

Compare expression of checked genes

Lus10012618 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.